RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 ACOX2Q99424 681 aa14.24□□□□□ -0.13
SHMT2-219ENST00000555563 C11orf70Q9BRQ4 267 aa14.24□□□□□ -0.13
SHMT2-219ENST00000555563 SLC2A11Q9BYW1 496 aa14.24□□□□□ -0.13
SHMT2-219ENST00000555563 ADAM33Q9BZ11 813 aa14.24□□□□□ -0.13
SHMT2-219ENST00000555563 CALCOCO1Q9P1Z2 691 aa14.24□□□□□ -0.13
SHMT2-219ENST00000555563 LRRC53A6NM62 1247 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 GOLGA6L19H0YKK7 550 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 AXIN1O15169 862 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 TBL1XO60907 577 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 FERP16591 822 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 TFE3P19532 575 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-219ENST00000555563 HLA-FP30511 346 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 NOS2P35228 1153 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 FLT3P36888 993 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 WASP42768 502 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 ID4P47928 161 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 RNASE9P60153 205 aaKnown RBP14.23□□□□□ -0.13
SHMT2-219ENST00000555563 RPS24P62847 133 aaKnown RBP14.23□□□□□ -0.13
SHMT2-219ENST00000555563 FANCCQ00597 558 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 NME3Q13232 169 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 LPAL2Q16609 132 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 MS4A13Q5J8X5 152 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 MPP7Q5T2T1 576 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 TRNP1Q6NT89 227 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 PRR23BQ6ZRT6 265 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 RASSF3Q86WH2 238 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 CHSY1Q86X52 802 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 CHPFQ8IZ52 775 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 HJURPQ8NCD3 748 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-219ENST00000555563 MDGA1Q8NFP4 955 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 SLC30A5Q8TAD4 765 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 WFDC5Q8TCV5 224 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 NPY6RQ99463 290 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 DDX50Q9BQ39 737 aaKnown RBP14.23□□□□□ -0.13
SHMT2-219ENST00000555563 IRX2Q9BZI1 471 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-219ENST00000555563 SEPT11Q9NVA2 429 aaKnown RBP14.23□□□□□ -0.13
SHMT2-219ENST00000555563 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.23□□□□□ -0.13
SHMT2-219ENST00000555563 STAP1Q9ULZ2 295 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 MYO6Q9UM54 1294 aa14.23□□□□□ -0.13
SHMT2-219ENST00000555563 MUC22E2RYF6 1773 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-219ENST00000555563 TCRBV21S2A2A0A5A6 115 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 KCNU1A8MYU2 1149 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 M0QYT0 321 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 RPP40O75818 363 aaKnown RBP14.22□□□□□ -0.13
SHMT2-219ENST00000555563 SLC2A3P11169 496 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 UNGP13051 313 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-219ENST00000555563 HOXB2P14652 356 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 NTSR1P30989 418 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 CCR1P32246 355 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 GBP1P32455 592 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 CNR2P34972 360 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 SULT1E1P49888 294 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 CENPCQ03188 943 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 SIM2Q14190 667 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-219ENST00000555563 NR1I3Q14994 352 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 EIF4HQ15056 248 aaKnown RBP14.22□□□□□ -0.13
SHMT2-219ENST00000555563 CLEC16AQ2KHT3 1053 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 E4F1Q66K89 784 aaPredicted RBP14.22□□□□□ -0.13
SHMT2-219ENST00000555563 RAP1GAP2Q684P5 730 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 LGI2Q8N0V4 545 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 ATP6V0D2Q8N8Y2 350 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 OLIG1Q8TAK6 271 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 GAB3Q8WWW8 586 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 RNF34Q969K3 372 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 PRMT1Q99873 361 aaKnown RBP14.22□□□□□ -0.13
SHMT2-219ENST00000555563 AGPAT1Q99943 283 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 TPSD1Q9BZJ3 242 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 TTYH3Q9C0H2 523 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 METTL5Q9NRN9 209 aaKnown RBP14.22□□□□□ -0.13
SHMT2-219ENST00000555563 PIGVQ9NUD9 493 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 ABCB8Q9NUT2 735 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.22□□□□□ -0.13
SHMT2-219ENST00000555563 CACNA2D2Q9NY47 1150 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 STIM2Q9P246 746 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 EBF1Q9UH73 591 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 TMEM59LQ9UK28 342 aa14.22□□□□□ -0.13
SHMT2-219ENST00000555563 A0A1W2PQF6 199 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 TYW5A2RUC4 315 aaKnown RBP14.21□□□□□ -0.13
SHMT2-219ENST00000555563 PABPC1P11940 636 aaKnown RBP14.21□□□□□ -0.13
SHMT2-219ENST00000555563 ABCB4P21439 1286 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 TACR2P21452 398 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 NSFP46459 744 aaKnown RBP14.21□□□□□ -0.13
SHMT2-219ENST00000555563 PTP4A2Q12974 167 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 NFKBIBQ15653 356 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 TMEM215Q68D42 235 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 CEP68Q76N32 757 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 IRF2BP2Q7Z5L9 587 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 PHLDB2Q86SQ0 1253 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 MFN1Q8IWA4 741 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 CFAP52Q8N1V2 620 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.21□□□□□ -0.13
SHMT2-219ENST00000555563 UCMAQ8WVF2 138 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 HMGB4Q8WW32 186 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 SORCS1Q8WY21 1168 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 NT5C3BQ969T7 300 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 ERLEC1Q96DZ1 483 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 TBCBQ99426 244 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 GABRG3Q99928 467 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 HINFPQ9BQA5 517 aa14.21□□□□□ -0.13
SHMT2-219ENST00000555563 SYT11Q9BT88 431 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms