RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 HMGB4Q8WW32 186 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 SPAG5Q96R06 1193 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 GABRG3Q99928 467 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 ADAM33Q9BZ11 813 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 FAM204AQ9H8W3 233 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 POLMQ9NP87 494 aaPredicted RBP21.29■■□□□ 1
VTI1B-205ENST00000555543 PARD6AQ9NPB6 346 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 RAD54BQ9Y620 910 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 SPAG17Q6Q759 2223 aa21.29■■□□□ 1
VTI1B-205ENST00000555543 SYNJ2BP-COX16A0A087WUM0 186 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 TEX33O43247 280 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 TBL1XO60907 577 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 TGM1P22735 817 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 CDK17Q00537 523 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 FMO1Q01740 532 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 IQCB1Q15051 598 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 NAA35Q5VZE5 725 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 CACNA2D4Q7Z3S7 1137 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 XYLT1Q86Y38 959 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 ZNF397Q8NF99 534 aaPredicted RBP21.28■■□□□ 1
VTI1B-205ENST00000555543 OLIG1Q8TAK6 271 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 CPA5Q8WXQ8 436 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 SORCS1Q8WY21 1168 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 DDIT4Q9NX09 232 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 COX16Q9P0S2 106 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 CALCOCO1Q9P1Z2 691 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 SDK1Q7Z5N4 2213 aa21.28■■□□□ 1
VTI1B-205ENST00000555543 SMTNL1A8MU46 457 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 ALDH1A2O94788 518 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 APOEP02649 317 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 RETP07949 1114 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 GABRG2P18507 467 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 STAT1P42224 750 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 SNX16P57768 344 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 RPS24P62847 133 aaKnown RBP21.27■■□□□ 1
VTI1B-205ENST00000555543 CDR2Q01850 454 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 PLK5Q496M5 336 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 MS4A13Q5J8X5 152 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 MPP7Q5T2T1 576 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 ERICH1Q86X53 443 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 ZNF677Q86XU0 584 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 C18orf8Q96DM3 657 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 DUSP15Q9H1R2 295 aaPredicted RBP21.27■■□□□ 1
VTI1B-205ENST00000555543 ABCB8Q9NUT2 735 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 ELOVL2Q9NXB9 296 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 STIM2Q9P246 746 aa21.27■■□□□ 1
VTI1B-205ENST00000555543 BCCIPQ9P287 314 aaKnown RBP eCLIP21.27■■□□□ 1
VTI1B-205ENST00000555543 THAP10Q9P2Z0 257 aaPredicted RBP21.27■■□□□ 1
VTI1B-205ENST00000555543 MUC22E2RYF6 1773 aaPredicted RBP21.26■□□□□ 0.99
VTI1B-205ENST00000555543 CYP1A1P04798 512 aaPredicted RBP21.26■□□□□ 0.99
VTI1B-205ENST00000555543 TFE3P19532 575 aaPredicted RBP21.26■□□□□ 0.99
VTI1B-205ENST00000555543 BCKDHBP21953 392 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 IL12RB1P42701 662 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 SPEM2Q0P670 501 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 EIF4HQ15056 248 aaKnown RBP21.26■□□□□ 0.99
VTI1B-205ENST00000555543 RAP1GAP2Q684P5 730 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 ZDHHC17Q8IUH5 632 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.26■□□□□ 0.99
VTI1B-205ENST00000555543 HJURPQ8NCD3 748 aaPredicted RBP21.26■□□□□ 0.99
VTI1B-205ENST00000555543 RLN3Q8WXF3 142 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 ZC3H10Q96K80 434 aaKnown RBP21.26■□□□□ 0.99
VTI1B-205ENST00000555543 BTN2A3PQ96KV6 586 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 IRX2Q9BZI1 471 aaPredicted RBP21.26■□□□□ 0.99
VTI1B-205ENST00000555543 CIPCQ9C0C6 399 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 RTN4Q9NQC3 1192 aaKnown RBP21.26■□□□□ 0.99
VTI1B-205ENST00000555543 GGA2Q9UJY4 613 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 STON1Q9Y6Q2 735 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 CEP250Q9BV73 2442 aa21.26■□□□□ 0.99
VTI1B-205ENST00000555543 DCHS1Q96JQ0 3298 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 KCNU1A8MYU2 1149 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 TACR2P21452 398 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 CD70P32970 193 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 NOS2P35228 1153 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 MATKP42679 507 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 RNASE9P60153 205 aaKnown RBP21.25■□□□□ 0.99
VTI1B-205ENST00000555543 ENPP2Q13822 863 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 ZNF234Q14588 700 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 USP39Q53GS9 565 aaKnown RBP21.25■□□□□ 0.99
VTI1B-205ENST00000555543 FAM102AQ5T9C2 384 aaPredicted RBP21.25■□□□□ 0.99
VTI1B-205ENST00000555543 SDE2Q6IQ49 451 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 KIAA0907Q7Z7F0 614 aaPredicted RBP21.25■□□□□ 0.99
VTI1B-205ENST00000555543 CHSY1Q86X52 802 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 LGI2Q8N0V4 545 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 CFAP52Q8N1V2 620 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 FRMD1Q8N878 549 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 LMLNQ96KR4 655 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 PCDHB18PQ96TA0 734 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 NPY6RQ99463 290 aa21.25■□□□□ 0.99
VTI1B-205ENST00000555543 DDX50Q9BQ39 737 aaKnown RBP21.25■□□□□ 0.99
VTI1B-205ENST00000555543 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.25■□□□□ 0.99
VTI1B-205ENST00000555543 GOLGA8SH3BPF8 625 aa21.24■□□□□ 0.99
VTI1B-205ENST00000555543 PABPC1P11940 636 aaKnown RBP21.24■□□□□ 0.99
VTI1B-205ENST00000555543 NDUFV2P19404 249 aa21.24■□□□□ 0.99
VTI1B-205ENST00000555543 GBP1P32455 592 aa21.24■□□□□ 0.99
VTI1B-205ENST00000555543 SCNN1AP37088 669 aa21.24■□□□□ 0.99
VTI1B-205ENST00000555543 P2RY2P41231 377 aa21.24■□□□□ 0.99
VTI1B-205ENST00000555543 ARID5AQ03989 594 aa21.24■□□□□ 0.99
VTI1B-205ENST00000555543 NME3Q13232 169 aa21.24■□□□□ 0.99
VTI1B-205ENST00000555543 TRNP1Q6NT89 227 aa21.24■□□□□ 0.99
VTI1B-205ENST00000555543 MMS22LQ6ZRQ5 1243 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms