RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 PRMT1Q99873 361 aaKnown RBP12.68□□□□□ -0.38
SHMT2-209ENST00000553949 DDX50Q9BQ39 737 aaKnown RBP12.68□□□□□ -0.38
SHMT2-209ENST00000553949 GOLPH3Q9H4A6 298 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 EBF3Q9H4W6 596 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 HPS4Q9NQG7 708 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 FZD10Q9ULW2 581 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 GUCA1BQ9UMX6 200 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 SNX10Q9Y5X0 201 aa12.68□□□□□ -0.38
SHMT2-209ENST00000553949 TRDMT1O14717 391 aaKnown RBP12.67□□□□□ -0.38
SHMT2-209ENST00000553949 NARSO43776 548 aaKnown RBP12.67□□□□□ -0.38
SHMT2-209ENST00000553949 NFATC1O95644 943 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 TACR2P21452 398 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 IL1R2P27930 398 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 VCPP55072 806 aaKnown RBP12.67□□□□□ -0.38
SHMT2-209ENST00000553949 MLLT6P55198 1093 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-209ENST00000553949 TAS2R40P59535 323 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 SLC25A11Q02978 314 aaKnown RBP12.67□□□□□ -0.38
SHMT2-209ENST00000553949 TNK2Q07912 1038 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 RUNX3Q13761 415 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 AUHQ13825 339 aaKnown RBP12.67□□□□□ -0.38
SHMT2-209ENST00000553949 DHCR24Q15392 516 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 HADHQ16836 314 aaKnown RBP12.67□□□□□ -0.38
SHMT2-209ENST00000553949 BOLA3Q53S33 107 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 EFHC2Q5JST6 749 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 ACBD5Q5T8D3 534 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-209ENST00000553949 RAP1GAP2Q684P5 730 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 CYP4V2Q6ZWL3 525 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-209ENST00000553949 DAAM2Q86T65 1068 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 CHSY1Q86X52 802 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 REXO1L1PQ8IX06 675 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 LRRC57Q8N9N7 239 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 SIK2Q9H0K1 926 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 OSBPL2Q9H1P3 480 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 ECT2Q9H8V3 914 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 ZWILCHQ9H900 591 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 CD320Q9NPF0 282 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 TRMT1Q9NXH9 659 aaKnown RBP12.67□□□□□ -0.38
SHMT2-209ENST00000553949 GTSE1Q9NYZ3 720 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 SORCS3Q9UPU3 1222 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 HYOU1Q9Y4L1 999 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 ALG6Q9Y672 507 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 CAPN6Q9Y6Q1 641 aa12.67□□□□□ -0.38
SHMT2-209ENST00000553949 OTOL1A6NHN0 477 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-209ENST00000553949 F5H5T6 163 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 GFRA2O00451 464 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 SPOPO43791 374 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 TSPAN3O60637 253 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 PALMO75781 387 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 ADH1CP00326 375 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 CYP17A1P05093 508 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 SRFP11831 508 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 GGCXP38435 758 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 SMTNL2Q2TAL5 461 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 KCNT1Q5JUK3 1230 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 LY6G5CQ5SRR4 150 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 ERMARDQ5T6L9 678 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 TXNRD3NBQ6F5E7 133 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 RFWD3Q6PCD5 774 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 RHBDF2Q6PJF5 856 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 TPGS1Q6ZTW0 290 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 C14orf80Q86SX3 495 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 TMEM25Q86YD3 366 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 PSTKQ8IV42 348 aaKnown RBP12.66□□□□□ -0.38
SHMT2-209ENST00000553949 SYCE1Q8N0S2 351 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 LGI2Q8N0V4 545 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 CCAR2Q8N163 923 aaKnown RBP12.66□□□□□ -0.38
SHMT2-209ENST00000553949 CPA6Q8N4T0 437 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 KIAA1524Q8TCG1 905 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 CSGALNACT1Q8TDX6 532 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 TEKT4Q8WW24 435 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 DNASE1L2Q92874 299 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 PRICKLE1Q96MT3 831 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-209ENST00000553949 SNRNP25Q9BV90 132 aaKnown RBP12.66□□□□□ -0.38
SHMT2-209ENST00000553949 MAGEB5Q9BZ81 275 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 TRPV5Q9NQA5 729 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 SLC2A4RGQ9NR83 387 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 SPHK2Q9NRA0 654 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 GPATCH2LQ9NWQ4 482 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 OR12D3Q9UGF7 316 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 VANGL2Q9ULK5 521 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 DUSP12Q9UNI6 340 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 AP4E1Q9UPM8 1137 aa12.66□□□□□ -0.38
SHMT2-209ENST00000553949 HELZP42694 1942 aaKnown RBP12.66□□□□□ -0.38
SHMT2-209ENST00000553949 VCANP13611 3396 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 USP27XA6NNY8 438 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 FAM72CH0Y354 149 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 CYBBP04839 570 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 KRT7P08729 469 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 RARAP10276 462 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 L1CAMP32004 1257 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 GJC1P36383 396 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 SGSHP51688 502 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 PFKPQ01813 784 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 NRG1Q02297 640 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-209ENST00000553949 CA9Q16790 459 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 ANO4Q32M45 955 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 ITPRIPL2Q3MIP1 535 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 MPPE1Q53F39 396 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 HS1BP3Q53T59 392 aa12.65□□□□□ -0.38
SHMT2-209ENST00000553949 FAM72AQ5TYM5 149 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms