RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 NCAPGQ9BPX3 1015 aa21.96■■□□□ 1.11
VPS29-206ENST00000549578 MAGEB5Q9BZ81 275 aa21.96■■□□□ 1.11
VPS29-206ENST00000549578 SIK2Q9H0K1 926 aa21.96■■□□□ 1.11
VPS29-206ENST00000549578 HPS4Q9NQG7 708 aa21.96■■□□□ 1.11
VPS29-206ENST00000549578 ARNTLO00327 626 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 COMTP21964 271 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 TAS2R40P59535 323 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 TXNRD3NBQ6F5E7 133 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 C11orf63Q6NUN7 778 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 DAAM2Q86T65 1068 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 CHSY1Q86X52 802 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 FAM217AQ8IXS0 508 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 TTC8Q8TAM2 541 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 ATP2A3Q93084 1043 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 ZWILCHQ9H900 591 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 GPATCH2LQ9NWQ4 482 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 TRMT1Q9NXH9 659 aaKnown RBP21.95■■□□□ 1.1
VPS29-206ENST00000549578 GTSE1Q9NYZ3 720 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 FZD10Q9ULW2 581 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 CAPN6Q9Y6Q1 641 aa21.95■■□□□ 1.1
VPS29-206ENST00000549578 GRID2IPA4D2P6 1211 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 OTOL1A6NHN0 477 aaPredicted RBP21.94■■□□□ 1.1
VPS29-206ENST00000549578 TSPAN3O60637 253 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 TACR2P21452 398 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 CHKAP35790 457 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 SLC25A11Q02978 314 aaKnown RBP21.94■■□□□ 1.1
VPS29-206ENST00000549578 SCAPQ12770 1279 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 SMTNL2Q2TAL5 461 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 TPGS1Q6ZTW0 290 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 TMEM25Q86YD3 366 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 IRF7Q92985 503 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 BHMTQ93088 406 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 MYEOVQ96EZ4 313 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 HAPLN3Q96S86 360 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 PRMT1Q99873 361 aaKnown RBP21.94■■□□□ 1.1
VPS29-206ENST00000549578 SNRNP25Q9BV90 132 aaKnown RBP21.94■■□□□ 1.1
VPS29-206ENST00000549578 SORCS3Q9UPU3 1222 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 ALG6Q9Y672 507 aa21.94■■□□□ 1.1
VPS29-206ENST00000549578 ZSCAN12O43309 604 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 NFATC1O95644 943 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 CYP17A1P05093 508 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 GJC1P36383 396 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 MTA1Q13330 715 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 AUHQ13825 339 aaKnown RBP21.93■■□□□ 1.1
VPS29-206ENST00000549578 DHCR24Q15392 516 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 IFI16Q16666 785 aaKnown RBP21.93■■□□□ 1.1
VPS29-206ENST00000549578 EFHC2Q5JST6 749 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 KCNT1Q5JUK3 1230 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 LY6G5CQ5SRR4 150 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 RHBDF2Q6PJF5 856 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 C14orf80Q86SX3 495 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 REXO1L1PQ8IX06 675 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 PYROXD2Q8N2H3 581 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 CPXM2Q8N436 756 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 RNF10Q8N5U6 811 aaKnown RBP21.93■■□□□ 1.1
VPS29-206ENST00000549578 P2RY11Q96G91 374 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 CALR3Q96L12 384 aaKnown RBP21.93■■□□□ 1.1
VPS29-206ENST00000549578 PRICKLE1Q96MT3 831 aaPredicted RBP21.93■■□□□ 1.1
VPS29-206ENST00000549578 DDX50Q9BQ39 737 aaKnown RBP21.93■■□□□ 1.1
VPS29-206ENST00000549578 ECT2Q9H8V3 914 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 SPHK2Q9NRA0 654 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 AP4E1Q9UPM8 1137 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 MYOFQ9NZM1 2061 aa21.93■■□□□ 1.1
VPS29-206ENST00000549578 TICRRQ7Z2Z1 1910 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 USP27XA6NNY8 438 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 GFRA2O00451 464 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 SPOPO43791 374 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 PALMO75781 387 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 SRFP11831 508 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 SLC1A1P43005 524 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 SGSHP51688 502 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 AIF1P55008 147 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 MLLT6P55198 1093 aaPredicted RBP21.92■■□□□ 1.1
VPS29-206ENST00000549578 RUNX3Q13761 415 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 CA9Q16790 459 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 HADHQ16836 314 aaKnown RBP21.92■■□□□ 1.1
VPS29-206ENST00000549578 ERMARDQ5T6L9 678 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 LGI2Q8N0V4 545 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 LRRC57Q8N9N7 239 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 UHRF1Q96T88 793 aaPredicted RBP21.92■■□□□ 1.1
VPS29-206ENST00000549578 VANGL2Q9ULK5 521 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 DUSP12Q9UNI6 340 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 A0A0C4DFX4 3053 aa21.92■■□□□ 1.1
VPS29-206ENST00000549578 F5H5T6 163 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 FAM72CH0Y354 149 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 TNNT1P13805 278 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 ANO4Q32M45 955 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 FAM72AQ5TYM5 149 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 FAM72DQ6L9T8 149 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 FBXL22Q6P050 247 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 FAM72BQ86X60 149 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 CPA6Q8N4T0 437 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 KIAA1524Q8TCG1 905 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 HSPH1Q92598 858 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 C1orf74Q96LT6 269 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 DHX35Q9H5Z1 703 aaKnown RBP21.91■■□□□ 1.1
VPS29-206ENST00000549578 PLK2Q9NYY3 685 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 OR12D3Q9UGF7 316 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 MUTYHQ9UIF7 546 aa21.91■■□□□ 1.1
VPS29-206ENST00000549578 COL4A3Q01955 1670 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms