RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 KIAA1522Q9P206 1035 aaPredicted RBP13.42□□□□□ -0.26
PTCH1-218ENST00000548945 TSPAN16Q9UKR8 245 aa13.42□□□□□ -0.26
PTCH1-218ENST00000548945 PCOLCE2Q9UKZ9 415 aa13.42□□□□□ -0.26
PTCH1-218ENST00000548945 PLA2G4CQ9UP65 541 aa13.42□□□□□ -0.26
PTCH1-218ENST00000548945 ZDHHC9Q9Y397 364 aa13.42□□□□□ -0.26
PTCH1-218ENST00000548945 TP53BP1Q12888 1972 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-218ENST00000548945 LOC400499M0QZD8 3231 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 CELSR3Q9NYQ7 3312 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 ADAMTS20P59510 1910 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 URB1O60287 2271 aaKnown RBP13.41□□□□□ -0.26
PTCH1-218ENST00000548945 SETSIPP0DME0 302 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 TBXAS1P24557 533 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-218ENST00000548945 HLA-FP30511 346 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 AFF3P51826 1226 aaKnown RBP13.41□□□□□ -0.26
PTCH1-218ENST00000548945 FKBP3Q00688 224 aaKnown RBP13.41□□□□□ -0.26
PTCH1-218ENST00000548945 ADIGQ0VDE8 80 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 GOLGA7BQ2TAP0 167 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 BSPRYQ5W0U4 402 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 LRSAM1Q6UWE0 723 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 ZC3H3Q8IXZ2 948 aaKnown RBP13.41□□□□□ -0.26
PTCH1-218ENST00000548945 AHI1Q8N157 1196 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 SIX6OS1Q8N1H7 587 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 ZNF557Q8N988 423 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-218ENST00000548945 SPRYD3Q8NCJ5 442 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 BAHD1Q8TBE0 780 aaPredicted RBP13.41□□□□□ -0.26
PTCH1-218ENST00000548945 TMA16Q96EY4 203 aaKnown RBP13.41□□□□□ -0.26
PTCH1-218ENST00000548945 GAREM1Q9H706 876 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 TM7SF3Q9NS93 570 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 RMND1Q9NWS8 449 aa13.41□□□□□ -0.26
PTCH1-218ENST00000548945 EIF2B4Q9UI10 523 aaKnown RBP13.41□□□□□ -0.26
PTCH1-218ENST00000548945 TULP2O00295 520 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 FLRT2O43155 660 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 IRAK2O43187 625 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 ATP5BP06576 529 aaKnown RBP13.4□□□□□ -0.26
PTCH1-218ENST00000548945 VDRP11473 427 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 BNC1Q01954 994 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 RING1Q06587 406 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 HLA-BQ31612 363 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 CBWD6Q4V339 395 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 PKDCCQ504Y2 493 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 FNDC3BQ53EP0 1204 aaKnown RBP13.4□□□□□ -0.26
PTCH1-218ENST00000548945 CBWD3Q5JTY5 395 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 CBWD5Q5RIA9 395 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 TCERG1LQ5VWI1 586 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 MSANTD2Q6P1R3 559 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 CCNI2Q6ZMN8 369 aaPredicted RBP13.4□□□□□ -0.26
PTCH1-218ENST00000548945 ADIPOR2Q86V24 386 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 IRGQQ8WZA9 623 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 GOLGA1Q92805 767 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 EEF2KMTQ96G04 330 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 CDC6Q99741 560 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 TSG101Q99816 390 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 GTPBP4Q9BZE4 634 aaKnown RBP13.4□□□□□ -0.26
PTCH1-218ENST00000548945 LHX5Q9H2C1 402 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 GOLPH3LQ9H4A5 285 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 SFMBT1Q9UHJ3 866 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 GGA2Q9UJY4 613 aa13.4□□□□□ -0.26
PTCH1-218ENST00000548945 FNDC3AQ9Y2H6 1198 aaKnown RBP13.4□□□□□ -0.26
PTCH1-218ENST00000548945 YJEFN3A6XGL0 299 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 E7ENQ6 273 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 TAF4O00268 1085 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 O00370 1275 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 TSPAN3O60637 253 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 IGLV3-27P01718 113 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 PAEPP09466 180 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 DLDP09622 509 aaKnown RBP13.39□□□□□ -0.27
PTCH1-218ENST00000548945 PABPC1P11940 636 aaKnown RBP13.39□□□□□ -0.27
PTCH1-218ENST00000548945 HLA-EP13747 358 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 CD19P15391 556 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 PRCPP42785 496 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 DAOAP59103 153 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 SCAPQ12770 1279 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 SUZ12Q15022 739 aaKnown RBP13.39□□□□□ -0.27
PTCH1-218ENST00000548945 TEAD4Q15561 434 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 DCAF17Q5H9S7 520 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-218ENST00000548945 NUGGCQ68CJ6 796 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 LCLAT1Q6UWP7 414 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 CHST9Q7L1S5 443 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 UNC45BQ8IWX7 931 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 SMYD4Q8IYR2 804 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-218ENST00000548945 UBR7Q8N806 425 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 SETD7Q8WTS6 366 aaKnown RBP13.39□□□□□ -0.27
PTCH1-218ENST00000548945 NDRG1Q92597 394 aaKnown RBP13.39□□□□□ -0.27
PTCH1-218ENST00000548945 EDEM1Q92611 657 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 AZIN2Q96A70 460 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 GSDMAQ96QA5 445 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 IL21RQ9HBE5 538 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 ABCB8Q9NUT2 735 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 ARMCX3Q9UH62 379 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-218ENST00000548945 SUN2Q9UH99 717 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 LHX6Q9UPM6 363 aa13.39□□□□□ -0.27
PTCH1-218ENST00000548945 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.39□□□□□ -0.27
PTCH1-218ENST00000548945 SMG1Q96Q15 3661 aaKnown RBP13.39□□□□□ -0.27
PTCH1-218ENST00000548945 A0A1B0GVT2 93 aa13.38□□□□□ -0.27
PTCH1-218ENST00000548945 PMM2O15305 246 aa13.38□□□□□ -0.27
PTCH1-218ENST00000548945 DKK1O94907 266 aa13.38□□□□□ -0.27
PTCH1-218ENST00000548945 SEMA4FO95754 770 aa13.38□□□□□ -0.27
PTCH1-218ENST00000548945 ACSL1P33121 698 aa13.38□□□□□ -0.27
PTCH1-218ENST00000548945 GRIA4P48058 902 aa13.38□□□□□ -0.27
PTCH1-218ENST00000548945 SLC11A2P49281 568 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms