RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 FAM204AQ9H8W3 233 aa12.33□□□□□ -0.44
YBX3-217ENST00000546164 SCUBE2Q9NQ36 999 aa12.33□□□□□ -0.44
YBX3-217ENST00000546164 POLR3BQ9NW08 1133 aaPredicted RBP12.33□□□□□ -0.44
YBX3-217ENST00000546164 TMEM51Q9NW97 253 aa12.33□□□□□ -0.44
YBX3-217ENST00000546164 CLEC4EQ9ULY5 219 aa12.33□□□□□ -0.44
YBX3-217ENST00000546164 MYO18AQ92614 2054 aaKnown RBP12.33□□□□□ -0.44
YBX3-217ENST00000546164 KCNU1A8MYU2 1149 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 NPC1O15118 1278 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 AXIN1O15169 862 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 GRAP2O75791 330 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 CCDC172P0C7W6 258 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 UNGP13051 313 aaPredicted RBP12.32□□□□□ -0.44
YBX3-217ENST00000546164 FERP16591 822 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 NTSR1P30989 418 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 SLC6A4P31645 630 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 CCR1P32246 355 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 GBP1P32455 592 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 MATKP42679 507 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 E2F5Q15329 346 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 GEN1Q17RS7 908 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 ZC3H12AQ5D1E8 599 aaKnown RBP12.32□□□□□ -0.44
YBX3-217ENST00000546164 FIGNQ5HY92 759 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 MS4A13Q5J8X5 152 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 TMEM92Q6UXU6 159 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 CACNA2D4Q7Z3S7 1137 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 ANKS1BQ7Z6G8 1248 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.32□□□□□ -0.44
YBX3-217ENST00000546164 HJURPQ8NCD3 748 aaPredicted RBP12.32□□□□□ -0.44
YBX3-217ENST00000546164 CPA5Q8WXQ8 436 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 BAP1Q92560 729 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 PGAP3Q96FM1 320 aaPredicted RBP12.32□□□□□ -0.44
YBX3-217ENST00000546164 BTN2A3PQ96KV6 586 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 NPY6RQ99463 290 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 EDEM3Q9BZQ6 932 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 TTYH3Q9C0H2 523 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 DDIT4Q9NX09 232 aa12.32□□□□□ -0.44
YBX3-217ENST00000546164 SMG5Q9UPR3 1016 aaKnown RBP12.32□□□□□ -0.44
YBX3-217ENST00000546164 GOLGA6L7A0A1B0GV03 622 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 TIMM44O43615 452 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 TSPAN3O60637 253 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 ALDH1A2O94788 518 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 SERPINC1P01008 464 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 HLA-FP30511 346 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 PXNP49023 591 aaPredicted RBP12.31□□□□□ -0.44
YBX3-217ENST00000546164 SGSHP51688 502 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 GSCP56915 257 aaPredicted RBP12.31□□□□□ -0.44
YBX3-217ENST00000546164 FANCCQ00597 558 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 CENPCQ03188 943 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 ENPP2Q13822 863 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 FAM102AQ5T9C2 384 aaPredicted RBP12.31□□□□□ -0.44
YBX3-217ENST00000546164 OTUD1Q5VV17 481 aaPredicted RBP12.31□□□□□ -0.44
YBX3-217ENST00000546164 EGFLAMQ63HQ2 1017 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 RFWD3Q6PCD5 774 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 IRF2BP2Q7Z5L9 587 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 KIAA0907Q7Z7F0 614 aaPredicted RBP12.31□□□□□ -0.44
YBX3-217ENST00000546164 ATP6V0D2Q8N8Y2 350 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 WFIKKN2Q8TEU8 576 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 GAB3Q8WWW8 586 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 PRICKLE1Q96MT3 831 aaPredicted RBP12.31□□□□□ -0.44
YBX3-217ENST00000546164 PCDHB18PQ96TA0 734 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 GABRG3Q99928 467 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 SYT11Q9BT88 431 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 NUCKS1Q9H1E3 243 aaKnown RBP12.31□□□□□ -0.44
YBX3-217ENST00000546164 CD248Q9HCU0 757 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 POLMQ9NP87 494 aaPredicted RBP12.31□□□□□ -0.44
YBX3-217ENST00000546164 ELOVL2Q9NXB9 296 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.31□□□□□ -0.44
YBX3-217ENST00000546164 SLC12A6Q9UHW9 1150 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 XPO7Q9UIA9 1087 aaKnown RBP12.31□□□□□ -0.44
YBX3-217ENST00000546164 TMEM59LQ9UK28 342 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 STAP1Q9ULZ2 295 aa12.31□□□□□ -0.44
YBX3-217ENST00000546164 A0A1W2PQF6 199 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 TYW5A2RUC4 315 aaKnown RBP12.3□□□□□ -0.44
YBX3-217ENST00000546164 GOLGA6L19H0YKK7 550 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 M0QYT0 321 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 TBL1XO60907 577 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 RPP40O75818 363 aaKnown RBP12.3□□□□□ -0.44
YBX3-217ENST00000546164 MOCS2O96007 188 aaPredicted RBP12.3□□□□□ -0.44
YBX3-217ENST00000546164 HOXB2P14652 356 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 ABCB4P21439 1286 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 FLT3P36888 993 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 PBX1P40424 430 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 PTP4A2Q12974 167 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 SIM2Q14190 667 aaPredicted RBP12.3□□□□□ -0.44
YBX3-217ENST00000546164 CLEC16AQ2KHT3 1053 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 SLC25A52Q3SY17 297 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 C2CD6Q53TS8 623 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 ANO7Q6IWH7 933 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 MMS22LQ6ZRQ5 1243 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 BNIPLQ7Z465 357 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 PHF13Q86YI8 300 aaPredicted RBP12.3□□□□□ -0.44
YBX3-217ENST00000546164 CHPFQ8IZ52 775 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 AHI1Q8N157 1196 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 MDGA1Q8NFP4 955 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 OLIG1Q8TAK6 271 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 UCMAQ8WVF2 138 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 RUBCNQ92622 972 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 MYEOVQ96EZ4 313 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 LMLNQ96KR4 655 aa12.3□□□□□ -0.44
YBX3-217ENST00000546164 ACOX2Q99424 681 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms