RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 USP36Q9P275 1121 aaKnown RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 SFMBT1Q9UHJ3 866 aa8.85□□□□□ -0.99
USP28-215ENST00000545608 KMT2BQ9UMN6 2715 aaPredicted RBP8.85□□□□□ -0.99
USP28-215ENST00000545608 MYH10P35580 1976 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 YJEFN3A6XGL0 299 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 UPK3BL1B0FP48 263 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 UPK3BL2E5RIL1 263 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 E7ENQ6 273 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 RNF225M0QZC1 329 aaPredicted RBP8.84□□□□□ -0.99
USP28-215ENST00000545608 O00370 1275 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 SLC16A3O15427 465 aaKnown RBP8.84□□□□□ -0.99
USP28-215ENST00000545608 HYAL3O43820 417 aaPredicted RBP8.84□□□□□ -0.99
USP28-215ENST00000545608 OPHN1O60890 802 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 VDRP11473 427 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 CD59P13987 128 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 CD19P15391 556 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 PRKCHP24723 683 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 CD6P30203 668 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 COPAP53621 1224 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 BCAT1P54687 386 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 SLC8A3P57103 927 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 SIM1P81133 766 aaPredicted RBP8.84□□□□□ -0.99
USP28-215ENST00000545608 ADIGQ0VDE8 80 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 BST2Q10589 180 aaKnown RBP8.84□□□□□ -0.99
USP28-215ENST00000545608 CACNA1EQ15878 2313 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 MSS51Q4VC12 460 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 PKDCCQ504Y2 493 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 ISM2Q6H9L7 571 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 ANKS1BQ7Z6G8 1248 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 RABEPKQ7Z6M1 372 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 HDDC3Q8N4P3 179 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 SPATA20Q8TB22 786 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 UCMAQ8WVF2 138 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 TFAP2BQ92481 460 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 SLC35C1Q96A29 364 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 PLD4Q96BZ4 506 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 CCDC34Q96HJ3 373 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 GSDMAQ96QA5 445 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 ZSWIM1Q9BR11 485 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 GPR174Q9BXC1 333 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 SLC2A11Q9BYW1 496 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 CIPCQ9C0C6 399 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 DNAAF2Q9NVR5 837 aaKnown RBP8.84□□□□□ -0.99
USP28-215ENST00000545608 HESX1Q9UBX0 185 aa8.84□□□□□ -0.99
USP28-215ENST00000545608 ARMCX3Q9UH62 379 aaPredicted RBP8.84□□□□□ -0.99
USP28-215ENST00000545608 HBS1LQ9Y450 684 aaKnown RBP8.84□□□□□ -0.99
USP28-215ENST00000545608 TNRC6BQ9UPQ9 1833 aaKnown RBP8.84□□□□□ -0.99
USP28-215ENST00000545608 PCNX2A6NKB5 2137 aa8.83□□□□□ -1
USP28-215ENST00000545608 PIK3R2O00459 728 aa8.83□□□□□ -1
USP28-215ENST00000545608 NPC1O15118 1278 aa8.83□□□□□ -1
USP28-215ENST00000545608 MSI1O43347 362 aaKnown RBP8.83□□□□□ -1
USP28-215ENST00000545608 TIMM44O43615 452 aa8.83□□□□□ -1
USP28-215ENST00000545608 SH3BP5O60239 455 aa8.83□□□□□ -1
USP28-215ENST00000545608 SYNCRIPO60506 623 aaKnown RBP8.83□□□□□ -1
USP28-215ENST00000545608 GJB3O75712 270 aa8.83□□□□□ -1
USP28-215ENST00000545608 SMC2O95347 1197 aa8.83□□□□□ -1
USP28-215ENST00000545608 CALCAP01258 141 aa8.83□□□□□ -1
USP28-215ENST00000545608 SYPP08247 313 aa8.83□□□□□ -1
USP28-215ENST00000545608 NCAM1P13591 858 aa8.83□□□□□ -1
USP28-215ENST00000545608 HLA-EP13747 358 aa8.83□□□□□ -1
USP28-215ENST00000545608 LCP1P13796 627 aa8.83□□□□□ -1
USP28-215ENST00000545608 HOXD9P28356 352 aaPredicted RBP8.83□□□□□ -1
USP28-215ENST00000545608 HLA-FP30511 346 aa8.83□□□□□ -1
USP28-215ENST00000545608 HARS2P49590 506 aaKnown RBP8.83□□□□□ -1
USP28-215ENST00000545608 RGS7P49802 495 aa8.83□□□□□ -1
USP28-215ENST00000545608 TPMTP51580 245 aa8.83□□□□□ -1
USP28-215ENST00000545608 ZNF132P52740 706 aa8.83□□□□□ -1
USP28-215ENST00000545608 DAOAP59103 153 aa8.83□□□□□ -1
USP28-215ENST00000545608 YWHAEP62258 255 aaKnown RBP8.83□□□□□ -1
USP28-215ENST00000545608 LRRC63Q05C16 580 aa8.83□□□□□ -1
USP28-215ENST00000545608 EIF4HQ15056 248 aaKnown RBP8.83□□□□□ -1
USP28-215ENST00000545608 PLEKHG6Q3KR16 790 aa8.83□□□□□ -1
USP28-215ENST00000545608 MPPE1Q53F39 396 aa8.83□□□□□ -1
USP28-215ENST00000545608 WDR45BQ5MNZ6 344 aa8.83□□□□□ -1
USP28-215ENST00000545608 SYCP2LQ5T4T6 812 aa8.83□□□□□ -1
USP28-215ENST00000545608 LCLAT1Q6UWP7 414 aa8.83□□□□□ -1
USP28-215ENST00000545608 CACUL1Q86Y37 369 aa8.83□□□□□ -1
USP28-215ENST00000545608 KDF1Q8NAX2 398 aaPredicted RBP8.83□□□□□ -1
USP28-215ENST00000545608 RNF139Q8WU17 664 aa8.83□□□□□ -1
USP28-215ENST00000545608 KCTD13Q8WZ19 329 aa8.83□□□□□ -1
USP28-215ENST00000545608 DNASE2BQ8WZ79 361 aa8.83□□□□□ -1
USP28-215ENST00000545608 PRCCQ92733 491 aaPredicted RBP8.83□□□□□ -1
USP28-215ENST00000545608 GATA6Q92908 595 aa8.83□□□□□ -1
USP28-215ENST00000545608 FOXJ1Q92949 421 aa8.83□□□□□ -1
USP28-215ENST00000545608 KAT5Q92993 513 aa8.83□□□□□ -1
USP28-215ENST00000545608 SMARCE1Q969G3 411 aa8.83□□□□□ -1
USP28-215ENST00000545608 TMA16Q96EY4 203 aaKnown RBP8.83□□□□□ -1
USP28-215ENST00000545608 SIPA1Q96FS4 1042 aa8.83□□□□□ -1
USP28-215ENST00000545608 CAMK1GQ96NX5 476 aa8.83□□□□□ -1
USP28-215ENST00000545608 IPO9Q96P70 1041 aaKnown RBP8.83□□□□□ -1
USP28-215ENST00000545608 ABCC13Q9NSE7 274 aa8.83□□□□□ -1
USP28-215ENST00000545608 OLA1Q9NTK5 396 aaKnown RBP8.83□□□□□ -1
USP28-215ENST00000545608 MAP10Q9P2G4 905 aa8.83□□□□□ -1
USP28-215ENST00000545608 STOML2Q9UJZ1 356 aa8.83□□□□□ -1
USP28-215ENST00000545608 RALYQ9UKM9 306 aaKnown RBP8.83□□□□□ -1
USP28-215ENST00000545608 KIAA1257Q9ULG3 409 aa8.83□□□□□ -1
USP28-215ENST00000545608 ZMIZ1Q9ULJ6 1067 aa8.83□□□□□ -1
USP28-215ENST00000545608 PLXND1Q9Y4D7 1925 aa8.83□□□□□ -1
USP28-215ENST00000545608 PI4KAP42356 2102 aa8.83□□□□□ -1
USP28-215ENST00000545608 USP24Q9UPU5 2620 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms