RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 RRAGAQ7L523 313 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 SLC41A1Q8IVJ1 513 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.66□□□□□ -0.22
RTN3-213ENST00000543552 DEFB124Q8NES8 71 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 LMO3Q8TAP4 145 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 AZIN2Q96A70 460 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 P2RY11Q96G91 374 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 NUP58Q9BVL2 599 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 MKRN2Q9H000 416 aaKnown RBP13.66□□□□□ -0.22
RTN3-213ENST00000543552 INTS2Q9H0H0 1204 aaKnown RBP13.66□□□□□ -0.22
RTN3-213ENST00000543552 PCED1AQ9H1Q7 454 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 ITM2CQ9NQX7 267 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 ABCB8Q9NUT2 735 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 GGA2Q9UJY4 613 aa13.66□□□□□ -0.22
RTN3-213ENST00000543552 GIPC1O14908 333 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 IGLV3-19P01714 112 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 PABPC1P11940 636 aaKnown RBP13.65□□□□□ -0.22
RTN3-213ENST00000543552 PRKCHP24723 683 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 HLA-FP30511 346 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 TPMTP51580 245 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 TBX4P57082 545 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 FOXC1Q12948 553 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 SEMA3BQ13214 749 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 SLC14A1Q13336 389 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 CHST9Q7L1S5 443 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 MINDY1Q8N5J2 469 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 HJURPQ8NCD3 748 aaPredicted RBP13.65□□□□□ -0.22
RTN3-213ENST00000543552 OR2T3Q8NH03 318 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 STK32AQ8WU08 396 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 KAT5Q92993 513 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 FAM149B1Q96BN6 582 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 GPR174Q9BXC1 333 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 SRRTQ9BXP5 876 aaKnown RBP13.65□□□□□ -0.22
RTN3-213ENST00000543552 MIS12Q9H081 205 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 ST7Q9NRC1 585 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 WSB2Q9NYS7 404 aaPredicted RBP13.65□□□□□ -0.22
RTN3-213ENST00000543552 CLEC4EQ9ULY5 219 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 TLR6Q9Y2C9 796 aa13.65□□□□□ -0.22
RTN3-213ENST00000543552 CKAP5Q14008 2032 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 A0A1B0GTW7 788 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 RNF225M0QZC1 329 aaPredicted RBP13.64□□□□□ -0.23
RTN3-213ENST00000543552 PIK3R2O00459 728 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 CAPN9O14815 690 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 ACSL4O60488 711 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 DLDP09622 509 aaKnown RBP13.64□□□□□ -0.23
RTN3-213ENST00000543552 POLR2EP19388 210 aaKnown RBP13.64□□□□□ -0.23
RTN3-213ENST00000543552 BMP6P22004 513 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 COPAP53621 1224 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 STX17P56962 302 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 ZBTB16Q05516 673 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 CAMK2GQ13555 558 aaPredicted RBP13.64□□□□□ -0.23
RTN3-213ENST00000543552 PIK3R6Q5UE93 754 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 TMEM215Q68D42 235 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 SMYD5Q6GMV2 418 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 BEND5Q7L4P6 421 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 PIP4P1Q86T03 277 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 ARHGEF19Q8IW93 802 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 MFN1Q8IWA4 741 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 SORCS1Q8WY21 1168 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 DNASE2BQ8WZ79 361 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 LHX5Q9H2C1 402 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 DNAAF2Q9NVR5 837 aaKnown RBP13.64□□□□□ -0.23
RTN3-213ENST00000543552 CNTN6Q9UQ52 1028 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 USP24Q9UPU5 2620 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 FRYQ5TBA9 3013 aa13.64□□□□□ -0.23
RTN3-213ENST00000543552 ASPMQ8IZT6 3477 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 ASCC3Q8N3C0 2202 aaKnown RBP13.63□□□□□ -0.23
RTN3-213ENST00000543552 H0Y626 953 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 TBL1XO60907 577 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 TRIM16O95361 564 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 APOEP02649 317 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 ASLP04424 464 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 ST8SIA6P61647 398 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 SFSWAPQ12872 951 aaKnown RBP13.63□□□□□ -0.23
RTN3-213ENST00000543552 CDH18Q13634 790 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 TTC31Q49AM3 519 aaPredicted RBP13.63□□□□□ -0.23
RTN3-213ENST00000543552 FAM133BQ5BKY9 247 aaKnown RBP13.63□□□□□ -0.23
RTN3-213ENST00000543552 MBLAC2Q68D91 279 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 KIAA0907Q7Z7F0 614 aaPredicted RBP13.63□□□□□ -0.23
RTN3-213ENST00000543552 ADIPOR2Q86V24 386 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 DQX1Q8TE96 717 aaKnown RBP13.63□□□□□ -0.23
RTN3-213ENST00000543552 CLEC4CQ8WTT0 213 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 KREMEN1Q96MU8 473 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 MED15Q96RN5 788 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 ZSWIM1Q9BR11 485 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 TMEM245Q9H330 911 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 UBE2TQ9NPD8 197 aaPredicted RBP13.63□□□□□ -0.23
RTN3-213ENST00000543552 CD93Q9NPY3 652 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 SUN2Q9UH99 717 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 RWDD2AQ9UIY3 292 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 PCDH15Q96QU1 1955 aa13.63□□□□□ -0.23
RTN3-213ENST00000543552 CACNA1EQ15878 2313 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 METTL12A8MUP2 240 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 THAP12O43422 761 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 LETM1O95202 739 aaPredicted RBP13.62□□□□□ -0.23
RTN3-213ENST00000543552 DNTTP04053 509 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 GNA15P30679 374 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 GPD2P43304 727 aa13.62□□□□□ -0.23
RTN3-213ENST00000543552 RPL34P49207 117 aaKnown RBP13.62□□□□□ -0.23
RTN3-213ENST00000543552 UBE2HP62256 183 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms