RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	NIPAL4	Q0D2K0	466 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	TBL3	Q12788	808 aa	Known RBP	13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	PDCD2	Q16342	344 aa	Predicted RBP	13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	DCAF15	Q66K64	600 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	STEAP4	Q687X5	459 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	OLFML1	Q6UWY5	402 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	FRMD7	Q6ZUT3	714 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	CYS1	Q717R9	158 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	MAGEB5	Q9BZ81	275 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	MINDY3	Q9H8M7	445 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	HOXC10	Q9NYD6	342 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	TNFSF13B	Q9Y275	285 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	IGKV6-21	A0A0C4DH24	114 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838		A6NJR5	290 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	C19orf81	C9J6K1	198 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	CSDE1	O75534	798 aa	Known RBP	13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	ALDH1A2	O94788	518 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	RALB	P11234	206 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	ARRB2	P32121	409 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	SESN2	P58004	480 aa	Predicted RBP	13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	GRAMD1B	Q3KR37	738 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	PMF1	Q6P1K2	205 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	EGFL6	Q8IUX8	553 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	SCUBE3	Q8IX30	993 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	CXorf38	Q8TB03	319 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	TFB1M	Q8WVM0	346 aa	Known RBP	13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	TMEM216	Q9P0N5	145 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	HACL1	Q9UJ83	578 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	COMMD3-BMI1	R4GMX3	469 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	SSC5D	A1L4H1	1573 aa		13.3	□□□□□ -0.28
DDX11-223	ENST00000542838	E2F8	A0AVK6	867 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	ZBTB42	B2RXF5	422 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	DCX	O43602	365 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	ITGA2B	P08514	1039 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	PABPC4L	P0CB38	370 aa	Known RBP	13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	TFE3	P19532	575 aa	Predicted RBP	13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	HDAC4	P56524	1084 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	SLC6A3	Q01959	620 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	ITGA9	Q13797	1035 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	PDK3	Q15120	406 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	STIL	Q15468	1287 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	SLC5A9	Q2M3M2	681 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	PPM1J	Q5JR12	505 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	MAP3K21	Q5TCX8	1036 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	BSPRY	Q5W0U4	402 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	METTL7B	Q6UX53	244 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	PHTF2	Q8N3S3	785 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	FBXW8	Q8N3Y1	598 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	CHST13	Q8NET6	341 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	QKI	Q96PU8	341 aa	Known RBP eCLIP	13.29	□□□□□ -0.28	3e-6	■■■■□ 24.5
DDX11-223	ENST00000542838	NDN	Q99608	321 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	EPAS1	Q99814	870 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	NT5C1A	Q9BXI3	368 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	COPG2	Q9UBF2	871 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	PSAT1	Q9Y617	370 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	ZNF195	O14628	629 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	MGAT1	P26572	445 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	GMPR	P36959	345 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	CLCN3	P51790	818 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	MBTD1	Q05BQ5	628 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	DEUP1	Q05D60	604 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	GRM2	Q14416	872 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	PRAMEF18	Q5VWM3	479 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	SAMD7	Q7Z3H4	446 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	ARHGAP22	Q7Z5H3	698 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	ICA1L	Q8NDH6	482 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	NAT14	Q8WUY8	206 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	HAPLN3	Q96S86	360 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	RNPEP	Q9H4A4	650 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	VRTN	Q9H8Y1	702 aa		13.29	□□□□□ -0.28
DDX11-223	ENST00000542838	LGR5	O75473	907 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	PRKCG	P05129	697 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	PIM1	P11309	404 aa	Predicted RBP	13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	COX4I1	P13073	169 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	ZFX	P17010	805 aa	Predicted RBP	13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	TYK2	P29597	1187 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	ATXN1	P54253	815 aa	Known RBP	13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	ANKRD20A4	Q4UJ75	823 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	EXOC8	Q8IYI6	725 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	ZNF358	Q9NW07	568 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	ARHGAP26	Q9UNA1	814 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	IQCF3	P0C7M6	154 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	ALOX15	P16050	662 aa	Predicted RBP	13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	CHN2	P52757	468 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	INCA1	Q0VD86	236 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	LSAMP	Q13449	338 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	EFCAB12	Q6NXP0	572 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	TXNDC16	Q9P2K2	825 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	MORF4L1	Q9UBU8	362 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	KIAA1257	Q9ULG3	409 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	MFHAS1	Q9Y4C4	1052 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	EVPL	Q92817	2033 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	ADCY6	O43306	1168 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	MLN	P12872	115 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	VAV1	P15498	845 aa		13.28	□□□□□ -0.28
DDX11-223	ENST00000542838	MX2	P20592	715 aa		13.28	□□□□□ -0.28

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