RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 C12orf29Q8N999 325 aa10.27□□□□□ -0.77
TRAF1-202ENST00000540010 GPBP1L1Q9HC44 474 aaPredicted RBP10.27□□□□□ -0.77
TRAF1-202ENST00000540010 STX18Q9P2W9 335 aaKnown RBP10.27□□□□□ -0.77
TRAF1-202ENST00000540010 DTNAQ9Y4J8 743 aa10.27□□□□□ -0.77
TRAF1-202ENST00000540010 MEI4A8MW99 385 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 FSCN2O14926 492 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 PDE5AO76074 875 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 SLC10A3P09131 477 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 IL10P22301 178 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 FLT3LGP49771 235 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 POU5F1Q01860 360 aaKnown RBP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 FAAP100Q0VG06 881 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 C6orf10Q5SRN2 563 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 KATNAL2Q8IYT4 538 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 IPMKQ8NFU5 416 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 CPXM1Q96SM3 734 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 LHX5Q9H2C1 402 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 PCYOX1Q9UHG3 505 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 KIAA1257Q9ULG3 409 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 CDY2AQ9Y6F7 541 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 CDY1Q9Y6F8 540 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 GPR32O75388 356 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 HMGCRP04035 888 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 TFE3P19532 575 aaPredicted RBP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 PCBP1Q15365 356 aaKnown RBP eCLIP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 MTFR1Q15390 333 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 STILQ15468 1287 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 FBXO47Q5MNV8 452 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 TCHHL1Q5QJ38 904 aaPredicted RBP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 TAF2Q6P1X5 1199 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 DEFB107AQ8IZN7 70 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 UBR7Q8N806 425 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 RXFP2Q8WXD0 754 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 SNX27Q96L92 541 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 ZCWPW1Q9H0M4 648 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 TJP2Q9UDY2 1190 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 PLXNB2O15031 1838 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 ANGPT2O15123 496 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 SNX2O60749 519 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 UPP2O95045 317 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 UNC5CO95185 931 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 HOXA11P31270 313 aaPredicted RBP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 CRYBB1P53674 252 aaPredicted RBP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 OCA2Q04671 838 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 CAPRIN1Q14444 709 aaKnown RBP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 APPL2Q8NEU8 664 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 FAM136AQ96C01 138 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 IFT43Q96FT9 208 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 BTBD10Q9BSF8 475 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 RNPEPL1Q9HAU8 725 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 PCDH9Q9HC56 1237 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 PDP2Q9P2J9 529 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 PACSIN3Q9UKS6 424 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 A8MUI8 341 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 KPNA6O60684 536 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 DUSP11O75319 330 aaKnown RBP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 HOXD8P13378 290 aaPredicted RBP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 AVPR1AP37288 418 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 ITGA9Q13797 1035 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 TEDDM1Q5T9Z0 273 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 RFWD2Q8NHY2 731 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 JOSD2Q8TAC2 188 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 FAM172AQ8WUF8 416 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 CYGBQ8WWM9 190 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 PABPC5Q96DU9 382 aaKnown RBP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 TNIP3Q96KP6 325 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 MRPL45Q9BRJ2 306 aaKnown RBP10.26□□□□□ -0.77
TRAF1-202ENST00000540010 TRIM15Q9C019 465 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 SNX5Q9Y5X3 404 aa10.26□□□□□ -0.77
TRAF1-202ENST00000540010 SIGLEC16A6NMB1 481 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 PPEF2O14830 753 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 NUDT17P0C025 328 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 TGM2P21980 687 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 GNL1P36915 607 aaPredicted RBP10.25□□□□□ -0.77
TRAF1-202ENST00000540010 TAF6P49848 677 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 PTP4A2Q12974 167 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 NBPF20Q3BBV1 942 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 KBTBD12Q3ZCT8 623 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 SWT1Q5T5J6 900 aaKnown RBP10.25□□□□□ -0.77
TRAF1-202ENST00000540010 CES3Q6UWW8 571 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 WDTC1Q8N5D0 677 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 SLC7A14Q8TBB6 771 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 GIPC2Q8TF65 315 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 CENPTQ96BT3 561 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 ELMO2Q96JJ3 720 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 ZMAT2Q96NC0 199 aaKnown RBP10.25□□□□□ -0.77
TRAF1-202ENST00000540010 SRPK1Q96SB4 655 aaKnown RBP10.25□□□□□ -0.77
TRAF1-202ENST00000540010 EPAS1Q99814 870 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 DDX50Q9BQ39 737 aaKnown RBP10.25□□□□□ -0.77
TRAF1-202ENST00000540010 CCDC134Q9H6E4 229 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 MRPL40Q9NQ50 206 aaKnown RBP10.25□□□□□ -0.77
TRAF1-202ENST00000540010 UBP1Q9NZI7 540 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 SHOC2Q9UQ13 582 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 SMAPO00193 183 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 EEF2KO00418 725 aaKnown RBP10.25□□□□□ -0.77
TRAF1-202ENST00000540010 ERBB2P04626 1255 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 CREB1P16220 341 aa10.25□□□□□ -0.77
TRAF1-202ENST00000540010 PURAQ00577 322 aaKnown RBP10.25□□□□□ -0.77
TRAF1-202ENST00000540010 PLIN5Q00G26 463 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms