RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FRMD1Q8N878 549 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 TMEM35BQ8NCS4 154 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 ANKRD20A12PQ8NF67 263 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 WFDC5Q8TCV5 224 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 EPS8L1Q8TE68 723 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 RLN3Q8WXF3 142 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 SORCS1Q8WY21 1168 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 ERLEC1Q96DZ1 483 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 PRICKLE1Q96MT3 831 aaPredicted RBP15.36■□□□□ 0.05
USP28-204ENST00000537642 NUCKS1Q9H1E3 243 aaKnown RBP15.36■□□□□ 0.05
USP28-204ENST00000537642 ARRDC1-AS1Q9H2J1 176 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 PDCL3Q9H2J4 239 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 NLRC4Q9NPP4 1024 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 SEMA4GQ9NTN9 838 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 THAP10Q9P2Z0 257 aaPredicted RBP15.36■□□□□ 0.05
USP28-204ENST00000537642 STON1Q9Y6Q2 735 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 CKAP5Q14008 2032 aa15.36■□□□□ 0.05
USP28-204ENST00000537642 DNAH14Q0VDD8 3507 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 FAM170AA1A519 330 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 GFPT2O94808 682 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 RHOBTB1O94844 696 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 MMEP08473 750 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 ATP1A3P13637 1013 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 CDK11BP21127 795 aaKnown RBP15.35■□□□□ 0.05
USP28-204ENST00000537642 IL12RB1P42701 662 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 GABRB2P47870 512 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 ID4P47928 161 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 SNX16P57768 344 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 CDK17Q00537 523 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 SLC6A3Q01959 620 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 ENPP2Q13822 863 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 EIF4HQ15056 248 aaKnown RBP15.35■□□□□ 0.05
USP28-204ENST00000537642 ELF2Q15723 593 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 CSRP2Q16527 193 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 MAP7D1Q3KQU3 841 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 MPP7Q5T2T1 576 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 PMS2CLQ68D20 193 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 SLC26A9Q7LBE3 791 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 KIAA0907Q7Z7F0 614 aaPredicted RBP15.35■□□□□ 0.05
USP28-204ENST00000537642 C11orf74Q86VG3 221 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.35■□□□□ 0.05
USP28-204ENST00000537642 ZNF397Q8NF99 534 aaPredicted RBP15.35■□□□□ 0.05
USP28-204ENST00000537642 UCMAQ8WVF2 138 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 RMDN1Q96DB5 314 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 DDX50Q9BQ39 737 aaKnown RBP15.35■□□□□ 0.05
USP28-204ENST00000537642 CIPCQ9C0C6 399 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 SYNCQ9H7C4 482 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 FAM204AQ9H8W3 233 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 ABCB8Q9NUT2 735 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 MBD1Q9UIS9 605 aaPredicted RBP15.35■□□□□ 0.05
USP28-204ENST00000537642 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.35■□□□□ 0.05
USP28-204ENST00000537642 GON4LQ3T8J9 2241 aa15.35■□□□□ 0.05
USP28-204ENST00000537642 NPC1O15118 1278 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 TIMM44O43615 452 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 DAB1O75553 588 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 LSM8O95777 96 aaKnown RBP15.34■□□□□ 0.05
USP28-204ENST00000537642 APOEP02649 317 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 NDUFV2P19404 249 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 SOX5P35711 763 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 RPS24P62847 133 aaKnown RBP15.34■□□□□ 0.05
USP28-204ENST00000537642 UBXN1Q04323 297 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 ZNF234Q14588 700 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 CCDC6Q16204 474 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 MS4A13Q5J8X5 152 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 PRR23CQ6ZRP0 262 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 ADIPOR2Q86V24 386 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 ZDHHC17Q8IUH5 632 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 DHX40Q8IX18 779 aaKnown RBP15.34■□□□□ 0.05
USP28-204ENST00000537642 HJURPQ8NCD3 748 aaPredicted RBP15.34■□□□□ 0.05
USP28-204ENST00000537642 WFIKKN2Q8TEU8 576 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 SLC20A1Q8WUM9 679 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 LMLNQ96KR4 655 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 BTN2A3PQ96KV6 586 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 ERGIC2Q96RQ1 377 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 BPIFA3Q9BQP9 254 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 NAT10Q9H0A0 1025 aaKnown RBP15.34■□□□□ 0.05
USP28-204ENST00000537642 SLC6A17Q9H1V8 727 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.34■□□□□ 0.05
USP28-204ENST00000537642 DDIT4Q9NX09 232 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 CALCOCO1Q9P1Z2 691 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 STIM2Q9P246 746 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 GGA2Q9UJY4 613 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 NOCTQ9UK39 431 aaKnown RBP15.34■□□□□ 0.05
USP28-204ENST00000537642 DAAM1Q9Y4D1 1078 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 PCDHGA5Q9Y5G8 931 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 CEP192Q8TEP8 1941 aa15.34■□□□□ 0.05
USP28-204ENST00000537642 MUC22E2RYF6 1773 aaPredicted RBP15.34■□□□□ 0.05
USP28-204ENST00000537642 SYNJ2BP-COX16A0A087WUM0 186 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 KCNU1A8MYU2 1149 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 PABPC1P11940 636 aaKnown RBP15.33■□□□□ 0.04
USP28-204ENST00000537642 CHRNB2P17787 502 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 TACR2P21452 398 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 CD70P32970 193 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 NOS2P35228 1153 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 NOMO3P69849 1222 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 LMNB2Q03252 620 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 RSPO4Q2I0M5 234 aaPredicted RBP15.33■□□□□ 0.04
USP28-204ENST00000537642 PLA2G2CQ5R387 149 aa15.33■□□□□ 0.04
USP28-204ENST00000537642 OTUD1Q5VV17 481 aaPredicted RBP15.33■□□□□ 0.04
USP28-204ENST00000537642 RAP1GAP2Q684P5 730 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms