RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 SLC6A17Q9H1V8 727 aa13.67□□□□□ -0.22
RTN3-207ENST00000536011 USP36Q9P275 1121 aaKnown RBP13.67□□□□□ -0.22
RTN3-207ENST00000536011 CEP192Q8TEP8 1941 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 PI4KAP42356 2102 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 GON4LQ3T8J9 2241 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 BIN1O00499 593 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 ARHGAP33O14559 1287 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 MSI1O43347 362 aaKnown RBP13.66□□□□□ -0.22
RTN3-207ENST00000536011 TSPAN3O60637 253 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 IGLV3-27P01718 113 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 KRT5P13647 590 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 BRD2P25440 801 aaKnown RBP13.66□□□□□ -0.22
RTN3-207ENST00000536011 RDXP35241 583 aaKnown RBP13.66□□□□□ -0.22
RTN3-207ENST00000536011 ACADSBP45954 432 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 NNTQ13423 1086 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 HNRNPDQ14103 355 aaKnown RBP13.66□□□□□ -0.22
RTN3-207ENST00000536011 PLEKHG6Q3KR16 790 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 RRAGAQ7L523 313 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 SLC41A1Q8IVJ1 513 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.66□□□□□ -0.22
RTN3-207ENST00000536011 DEFB124Q8NES8 71 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 LMO3Q8TAP4 145 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 AZIN2Q96A70 460 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 P2RY11Q96G91 374 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 NUP58Q9BVL2 599 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 MKRN2Q9H000 416 aaKnown RBP13.66□□□□□ -0.22
RTN3-207ENST00000536011 INTS2Q9H0H0 1204 aaKnown RBP13.66□□□□□ -0.22
RTN3-207ENST00000536011 PCED1AQ9H1Q7 454 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 ITM2CQ9NQX7 267 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 ABCB8Q9NUT2 735 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 GGA2Q9UJY4 613 aa13.66□□□□□ -0.22
RTN3-207ENST00000536011 GIPC1O14908 333 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 IGLV3-19P01714 112 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 PABPC1P11940 636 aaKnown RBP13.65□□□□□ -0.22
RTN3-207ENST00000536011 PRKCHP24723 683 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 HLA-FP30511 346 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 TPMTP51580 245 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 TBX4P57082 545 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 FOXC1Q12948 553 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 SEMA3BQ13214 749 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 SLC14A1Q13336 389 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 CHST9Q7L1S5 443 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 MINDY1Q8N5J2 469 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 HJURPQ8NCD3 748 aaPredicted RBP13.65□□□□□ -0.22
RTN3-207ENST00000536011 OR2T3Q8NH03 318 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 STK32AQ8WU08 396 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 KAT5Q92993 513 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 FAM149B1Q96BN6 582 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 GPR174Q9BXC1 333 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 SRRTQ9BXP5 876 aaKnown RBP13.65□□□□□ -0.22
RTN3-207ENST00000536011 MIS12Q9H081 205 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 ST7Q9NRC1 585 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 WSB2Q9NYS7 404 aaPredicted RBP13.65□□□□□ -0.22
RTN3-207ENST00000536011 CLEC4EQ9ULY5 219 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 TLR6Q9Y2C9 796 aa13.65□□□□□ -0.22
RTN3-207ENST00000536011 CKAP5Q14008 2032 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 A0A1B0GTW7 788 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 RNF225M0QZC1 329 aaPredicted RBP13.64□□□□□ -0.23
RTN3-207ENST00000536011 PIK3R2O00459 728 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 CAPN9O14815 690 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 ACSL4O60488 711 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 DLDP09622 509 aaKnown RBP13.64□□□□□ -0.23
RTN3-207ENST00000536011 POLR2EP19388 210 aaKnown RBP13.64□□□□□ -0.23
RTN3-207ENST00000536011 BMP6P22004 513 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 COPAP53621 1224 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 STX17P56962 302 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 ZBTB16Q05516 673 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 CAMK2GQ13555 558 aaPredicted RBP13.64□□□□□ -0.23
RTN3-207ENST00000536011 PIK3R6Q5UE93 754 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 TMEM215Q68D42 235 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 SMYD5Q6GMV2 418 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 BEND5Q7L4P6 421 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 PIP4P1Q86T03 277 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 ARHGEF19Q8IW93 802 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 MFN1Q8IWA4 741 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 SORCS1Q8WY21 1168 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 DNASE2BQ8WZ79 361 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 LHX5Q9H2C1 402 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 DNAAF2Q9NVR5 837 aaKnown RBP13.64□□□□□ -0.23
RTN3-207ENST00000536011 CNTN6Q9UQ52 1028 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 USP24Q9UPU5 2620 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 FRYQ5TBA9 3013 aa13.64□□□□□ -0.23
RTN3-207ENST00000536011 ASPMQ8IZT6 3477 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 ASCC3Q8N3C0 2202 aaKnown RBP13.63□□□□□ -0.23
RTN3-207ENST00000536011 H0Y626 953 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 TBL1XO60907 577 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 TRIM16O95361 564 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 APOEP02649 317 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 ASLP04424 464 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 ST8SIA6P61647 398 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 SFSWAPQ12872 951 aaKnown RBP13.63□□□□□ -0.23
RTN3-207ENST00000536011 CDH18Q13634 790 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 TTC31Q49AM3 519 aaPredicted RBP13.63□□□□□ -0.23
RTN3-207ENST00000536011 FAM133BQ5BKY9 247 aaKnown RBP13.63□□□□□ -0.23
RTN3-207ENST00000536011 MBLAC2Q68D91 279 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 KIAA0907Q7Z7F0 614 aaPredicted RBP13.63□□□□□ -0.23
RTN3-207ENST00000536011 ADIPOR2Q86V24 386 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 DQX1Q8TE96 717 aaKnown RBP13.63□□□□□ -0.23
RTN3-207ENST00000536011 CLEC4CQ8WTT0 213 aa13.63□□□□□ -0.23
RTN3-207ENST00000536011 KREMEN1Q96MU8 473 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms