RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SPATA31A5Q5VU36 1347 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 SPATA31A7Q8IWB4 1347 aa3.19□□□□□ -1.9
CD44-238ENST00000534296 FAM90A10PA6NDY2 464 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 C2CD4BA6NLJ0 364 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 IKBKBO14920 756 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 CTIFO43310 598 aaKnown RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 TPD52L2O43399 206 aaKnown RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 OAZ2O95190 189 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 SGPL1O95470 568 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 LDHAP00338 332 aaKnown RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 MBPP02686 304 aaPredicted RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 SETSIPP0DME0 302 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 CYP19A1P11511 503 aaPredicted RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 PRF1P14222 555 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 ST6GAL1P15907 406 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 HOXD9P28356 352 aaPredicted RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 THBS4P35443 961 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 ALDH7A1P49419 539 aaKnown RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 KRTAP10-11P60412 298 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 B4GALNT1Q00973 533 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 SRSF1Q07955 248 aaKnown RBP eCLIP3.18□□□□□ -1.9
CD44-238ENST00000534296 ZRSR2Q15696 482 aaKnown RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 RAB30Q15771 203 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 MPEG1Q2M385 716 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 DGKKQ5KSL6 1271 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 ZNF569Q5MCW4 686 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 MANEAQ5SRI9 462 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 TMEM88Q6PEY1 159 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 LVRNQ6Q4G3 990 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 PIK3AP1Q6ZUJ8 805 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 TRAPPC11Q7Z392 1133 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 MORC1Q86VD1 984 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 GLCCI1Q86VQ1 547 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.18□□□□□ -1.9
CD44-238ENST00000534296 Q8N9P0 234 aaPredicted RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 SLC44A5Q8NCS7 719 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 VPS37AQ8NEZ2 397 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 GJA10Q969M2 543 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 PRR11Q96HE9 360 aaPredicted RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 NLRP4Q96MN2 994 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 PRPF18Q99633 342 aaKnown RBP3.18□□□□□ -1.9
CD44-238ENST00000534296 ABHD14AQ9BUJ0 271 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 SCNM1Q9BWG6 230 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 TM2D2Q9BX73 214 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 STK33Q9BYT3 514 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 CHST12Q9NRB3 414 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 DECR2Q9NUI1 292 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 DAAM1Q9Y4D1 1078 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 DTNAQ9Y4J8 743 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 PCDHGB2Q9Y5G2 931 aa3.18□□□□□ -1.9
CD44-238ENST00000534296 SLC22A23A1A5C7 686 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 PROB1E7EW31 1015 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 F5H423 210 aaPredicted RBP3.17□□□□□ -1.9
CD44-238ENST00000534296 PRYO14603 147 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 RRHO14718 337 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 PLA2G6O60733 806 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 EIF3JO75822 258 aaKnown RBP3.17□□□□□ -1.9
CD44-238ENST00000534296 NTSR2O95665 410 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 ITGA5P08648 1049 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 SNHG28P0DPA3 235 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 ALADP13716 330 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 NPPBP16860 134 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 TGM2P21980 687 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 CDC25AP30304 524 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 HOXA7P31268 230 aaPredicted RBP3.17□□□□□ -1.9
CD44-238ENST00000534296 AKT1P31749 480 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 AGTR2P50052 363 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 CHAF1AQ13111 956 aaPredicted RBP3.17□□□□□ -1.9
CD44-238ENST00000534296 MAPK7Q13164 816 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 FHL3Q13643 280 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 DLGAP5Q15398 846 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 PDCD2Q16342 344 aaPredicted RBP3.17□□□□□ -1.9
CD44-238ENST00000534296 EARS2Q5JPH6 523 aaKnown RBP3.17□□□□□ -1.9
CD44-238ENST00000534296 DAB2IPQ5VWQ8 1189 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 ANKRD40Q6AI12 368 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 AWAT2Q6E213 333 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 ISM2Q6H9L7 571 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 RINT1Q6NUQ1 792 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 PGBD2Q6P3X8 592 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 KYAT3Q6YP21 454 aaKnown RBP3.17□□□□□ -1.9
CD44-238ENST00000534296 COLCA1Q6ZS62 124 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 LAS2Q8IYD9 372 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 NRACQ8N912 160 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 ZFPM2Q8WW38 1151 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 CENPIQ92674 756 aaPredicted RBP3.17□□□□□ -1.9
CD44-238ENST00000534296 KIAA1191Q96A73 305 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 ZBTB9Q96C00 473 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 REXO5Q96IC2 774 aaKnown RBP3.17□□□□□ -1.9
CD44-238ENST00000534296 PAAF1Q9BRP4 392 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 AS3MTQ9HBK9 375 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 TMEM8AQ9HCN3 771 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 KCNK9Q9NPC2 374 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 PLCB1Q9NQ66 1216 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 HEY2Q9UBP5 337 aa3.17□□□□□ -1.9
CD44-238ENST00000534296 FNDC1Q4ZHG4 1894 aaPredicted RBP3.17□□□□□ -1.9
CD44-238ENST00000534296 LY6G6EA0A0G2JKS1 128 aa3.16□□□□□ -1.9
CD44-238ENST00000534296 hCG_1642624A0A1W2PR95 340 aa3.16□□□□□ -1.9
CD44-238ENST00000534296 GXYLT2A0PJZ3 443 aa3.16□□□□□ -1.9
CD44-238ENST00000534296 INSIG1O15503 277 aa3.16□□□□□ -1.9
CD44-238ENST00000534296 UGDHO60701 494 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms