RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 SLC12A4Q9UP95 1085 aa3.32□□□□□ -1.88
CD44-234ENST00000531873 GDAQ9Y2T3 454 aa3.32□□□□□ -1.88
CD44-234ENST00000531873 TCAF1Q9Y4C2 921 aa3.32□□□□□ -1.88
CD44-234ENST00000531873 LAS1LQ9Y4W2 734 aaKnown RBP3.32□□□□□ -1.88
CD44-234ENST00000531873 FAM90A7PA6NKC0 464 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 FAM90A22PA8MWA6 464 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 FAM90A12PA8MX19 464 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 FAM90A23PA8MXZ1 464 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 H3BNC9 293 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 AP4M1O00189 453 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 GRM8O00222 908 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 PSMD9O00233 223 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 PEX12O00623 359 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 YY2O15391 372 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 SEPT4O43236 478 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 HNRNPRO43390 633 aaKnown RBP3.31□□□□□ -1.88
CD44-234ENST00000531873 TMPRSS11DO60235 418 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 GFPT2O94808 682 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 NXPH3O95157 252 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 KAT7O95251 611 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 ONECUT2O95948 504 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 CHRM2P08172 466 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 C1SP09871 688 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 ITGAMP11215 1152 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 IGFBP2P18065 325 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 FPR3P25089 353 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 GALNSP34059 522 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 GRK5P34947 590 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 PGM1P36871 562 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 CCR9P51686 369 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 SUMO2P61956 95 aaKnown RBP3.31□□□□□ -1.88
CD44-234ENST00000531873 GPC5P78333 572 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 PRKG2Q13237 762 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 THOC5Q13769 683 aaKnown RBP3.31□□□□□ -1.88
CD44-234ENST00000531873 PTPRRQ15256 657 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 CDSNQ15517 529 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 GPR68Q15743 365 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 MEA1Q16626 185 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 L1TD1Q5T7N2 865 aaKnown RBP3.31□□□□□ -1.88
CD44-234ENST00000531873 SPATA1Q5VX52 437 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 DENND1BQ6P3S1 775 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 CRIP3Q6Q6R5 217 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 LRRC8DQ7L1W4 858 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.31□□□□□ -1.88
CD44-234ENST00000531873 BEND2Q8NDZ0 799 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 OR52L2PQ8NGH6 319 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 CREB3L4Q8TEY5 395 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 CACTINQ8WUQ7 758 aaKnown RBP3.31□□□□□ -1.88
CD44-234ENST00000531873 EXTL1Q92935 676 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 ELP4Q96EB1 424 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 MASTLQ96GX5 879 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 KAZALD1Q96I82 304 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 APOPT1Q96IL0 206 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 LOXL4Q96JB6 756 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 VPS50Q96JG6 964 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 PGBD1Q96JS3 809 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 LENG8Q96PV6 779 aaPredicted RBP3.31□□□□□ -1.88
CD44-234ENST00000531873 SERINC2Q96SA4 455 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 NPAS1Q99742 590 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 TREX2Q9BQ50 279 aaPredicted RBP3.31□□□□□ -1.88
CD44-234ENST00000531873 CENPOQ9BU64 300 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 ELOVL1Q9BW60 279 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 CLPBQ9H078 707 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 TTYH1Q9H313 450 aaPredicted RBP3.31□□□□□ -1.88
CD44-234ENST00000531873 DEF6Q9H4E7 631 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 SLC22A11Q9NSA0 550 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 TBCCD1Q9NVR7 557 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 EHD3Q9NZN3 535 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 ANKFY1Q9P2R3 1169 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 FZD1Q9UP38 647 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 NAALADL1Q9UQQ1 740 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 RABGAP1Q9Y3P9 1069 aa3.31□□□□□ -1.88
CD44-234ENST00000531873 COPG1Q9Y678 874 aaKnown RBP3.31□□□□□ -1.88
CD44-234ENST00000531873 CYP3A7-CYP3A51PA0A087WV96 503 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 TBC1D3DA0A087WVF3 549 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 TBC1D3IA0A087WXS9 549 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 TBC1D3EA0A087X179 549 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 TBC1D3KA0A087X1G2 549 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 FSD2A1L4K1 749 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 ANKRD18BA2A2Z9 1011 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 PI4KAP2A4QPH2 592 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 TBC1D3BA6NDS4 549 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 TBC1D3FA6NER0 549 aaPredicted RBP3.3□□□□□ -1.88
CD44-234ENST00000531873 NPIPB13A6NJU9 1138 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 NPIPB5A8MRT5 1133 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 TBC1D3LB9A6J9 549 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 NPIPB4C9JG80 1138 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 K7ENM7 598 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 MPPED1O15442 326 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 TBC1D3HP0C7X1 549 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 TMIGD3P0DMS9 266 aaPredicted RBP3.3□□□□□ -1.88
CD44-234ENST00000531873 ZFXP17010 805 aaPredicted RBP3.3□□□□□ -1.88
CD44-234ENST00000531873 MATN1P21941 496 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 MMP8P22894 467 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 CYP3A7P24462 503 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 CXCR5P32302 372 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 RGS2P41220 211 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 TXNL4AP83876 142 aaKnown RBP3.3□□□□□ -1.88
CD44-234ENST00000531873 CDK18Q07002 472 aa3.3□□□□□ -1.88
CD44-234ENST00000531873 LMAN2Q12907 356 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms