RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ABCC13Q9NSE7 274 aa11.84□□□□□ -0.51
VPS28-214ENST00000531032 GOLGA6L4A6NEF3 574 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 PMM2O15305 246 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 BCAT2O15382 392 aaPredicted RBP11.83□□□□□ -0.52
VPS28-214ENST00000531032 TSPAN3O60637 253 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 GABBR2O75899 941 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 SMC2O95347 1197 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 ACADMP11310 421 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 HLA-EP13747 358 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 FMO5P49326 533 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 SGSHP51688 502 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 ARID5AQ03989 594 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 LRMPQ12912 555 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 TRIP6Q15654 476 aaKnown RBP11.83□□□□□ -0.52
VPS28-214ENST00000531032 PTPRNQ16849 979 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 MPP7Q5T2T1 576 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 TMEM270Q6UE05 265 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 ADIPOR2Q86V24 386 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 CACUL1Q86Y37 369 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 NAXDQ8IW45 347 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 AHI1Q8N157 1196 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 C1orf216Q8TAB5 229 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 SLC35F5Q8WV83 523 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 ZCCHC14Q8WYQ9 949 aaKnown RBP11.83□□□□□ -0.52
VPS28-214ENST00000531032 IRGQQ8WZA9 623 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 ERCC4Q92889 916 aaPredicted RBP11.83□□□□□ -0.52
VPS28-214ENST00000531032 TMA16Q96EY4 203 aaKnown RBP11.83□□□□□ -0.52
VPS28-214ENST00000531032 ZSWIM1Q9BR11 485 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 IRX2Q9BZI1 471 aaPredicted RBP11.83□□□□□ -0.52
VPS28-214ENST00000531032 MIR1-1HGQ9H1L0 117 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 FBRSQ9HAH7 460 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 METTL14Q9HCE5 456 aaKnown RBP11.83□□□□□ -0.52
VPS28-214ENST00000531032 ABCB8Q9NUT2 735 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 GGA2Q9UJY4 613 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.83□□□□□ -0.52
VPS28-214ENST00000531032 PLA2G4CQ9UP65 541 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 DMXL2Q8TDJ6 3036 aa11.83□□□□□ -0.52
VPS28-214ENST00000531032 PKD1L2Q7Z442 2459 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 FREM2Q5SZK8 3169 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 SRRM3A6NNA2 597 aaPredicted RBP11.82□□□□□ -0.52
VPS28-214ENST00000531032 PSMA7O14818 248 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 IRAK2O43187 625 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 CBFA2T3O75081 653 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 ZNF883P0CG24 379 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 PABPC1P11940 636 aaKnown RBP11.82□□□□□ -0.52
VPS28-214ENST00000531032 LCP1P13796 627 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 NUCB2P80303 420 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 BNC1Q01954 994 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 RING1Q06587 406 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 CNGA2Q16280 664 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 FNDC3BQ53EP0 1204 aaKnown RBP11.82□□□□□ -0.52
VPS28-214ENST00000531032 FAM133BQ5BKY9 247 aaKnown RBP11.82□□□□□ -0.52
VPS28-214ENST00000531032 PIK3R6Q5UE93 754 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 PMF1Q6P1K2 205 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 CHST9Q7L1S5 443 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 GLRX5Q86SX6 157 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 CHCHD4Q8N4Q1 142 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 CYB5D2Q8WUJ1 264 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 SMARCE1Q969G3 411 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 CEP63Q96MT8 703 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 NT5C1BQ96P26 610 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 LHX5Q9H2C1 402 aa11.82□□□□□ -0.52
VPS28-214ENST00000531032 EIF2B4Q9UI10 523 aaKnown RBP11.82□□□□□ -0.52
VPS28-214ENST00000531032 RALYQ9UKM9 306 aaKnown RBP11.82□□□□□ -0.52
VPS28-214ENST00000531032 M0QYV0 167 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 RNF225M0QZC1 329 aaPredicted RBP11.81□□□□□ -0.52
VPS28-214ENST00000531032 CER1O95813 267 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 LTFP02788 710 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 DLDP09622 509 aaKnown RBP11.81□□□□□ -0.52
VPS28-214ENST00000531032 FTH1P19P0C7X4 201 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 SLC6A4P31645 630 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 ACSL1P33121 698 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 RGS7P49802 495 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 ZBTB16Q05516 673 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 STILQ15468 1287 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 NUGGCQ68CJ6 796 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 MBLAC2Q68D91 279 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 IL27RAQ6UWB1 636 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 FAM124AQ86V42 546 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 UNC45BQ8IWX7 931 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 ZNF366Q8N895 744 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 LMO3Q8TAP4 145 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 WFDC5Q8TCV5 224 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 ADAMTS14Q8WXS8 1223 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 KAT5Q92993 513 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 AZIN2Q96A70 460 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 DHTKD1Q96HY7 919 aaPredicted RBP11.81□□□□□ -0.52
VPS28-214ENST00000531032 LMLNQ96KR4 655 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 HSFY1Q96LI6 401 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 TIGD1Q96MW7 591 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 GAREM1Q9H706 876 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 IL21RQ9HBE5 538 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 PRSS16Q9NQE7 514 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 PCOLCE2Q9UKZ9 415 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 FNDC3AQ9Y2H6 1198 aaKnown RBP11.81□□□□□ -0.52
VPS28-214ENST00000531032 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.81□□□□□ -0.52
VPS28-214ENST00000531032 PCDHB9Q9Y5E1 797 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 PCDHB4Q9Y5E5 795 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 NUMA1Q14980 2115 aa11.81□□□□□ -0.52
VPS28-214ENST00000531032 GOLGA6L7A0A1B0GV03 622 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms