RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ITM2AO43736 263 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 ZNF286BP0CG31 522 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 FGF3P11487 239 aaPredicted RBP19.84■□□□□ 0.77
VPS28-213ENST00000530983 GOT1P17174 413 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 SP100P23497 879 aaPredicted RBP19.84■□□□□ 0.77
VPS28-213ENST00000530983 DNAL1Q4LDG9 190 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 PYROXD2Q8N2H3 581 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 LGMNQ99538 433 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 A0A0A0MRY4 1105 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 DGKIO75912 1065 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 SNX16P57768 344 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 RPL10AP62906 217 aaKnown RBP19.84■□□□□ 0.77
VPS28-213ENST00000530983 PDE1CQ14123 709 aaPredicted RBP19.84■□□□□ 0.77
VPS28-213ENST00000530983 DBN1Q16643 649 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 TRMT5Q32P41 509 aaKnown RBP19.84■□□□□ 0.77
VPS28-213ENST00000530983 TEDDM1Q5T9Z0 273 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 N4BP2L1Q5TBK1 243 aaPredicted RBP19.84■□□□□ 0.77
VPS28-213ENST00000530983 CASC4Q6P4E1 433 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 MTHFD1LQ6UB35 978 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 PPFIBP2Q8ND30 876 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 PIWIL2Q8TC59 973 aaKnown RBP19.84■□□□□ 0.77
VPS28-213ENST00000530983 TFB1MQ8WVM0 346 aaKnown RBP19.84■□□□□ 0.77
VPS28-213ENST00000530983 CLMNQ96JQ2 1002 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 SPATA13Q96N96 652 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 APOL6Q9BWW8 343 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 C1orf21Q9H246 121 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 PIH1D1Q9NWS0 290 aaKnown RBP19.84■□□□□ 0.77
VPS28-213ENST00000530983 MORF4L1Q9UBU8 362 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 TUBGCP4Q9UGJ1 667 aa19.84■□□□□ 0.77
VPS28-213ENST00000530983 TPP1O14773 563 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 MLNP12872 115 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 AOC1P19801 751 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 CPOXP36551 454 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 ACTR3P61158 418 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 ARHGAP17Q68EM7 881 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 PACS1Q6VY07 963 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 MFN1Q8IWA4 741 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 C7orf31Q8N865 590 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 OR6B3Q8NGW1 331 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 PPP1R14CQ8TAE6 165 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 ACMSDQ8TDX5 336 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 XPNPEP3Q9NQH7 507 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 DLGAP2Q9P1A6 1054 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 PSAT1Q9Y617 370 aa19.83■□□□□ 0.76
VPS28-213ENST00000530983 MAP3K7O43318 606 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 ERFP50548 548 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 ROR2Q01974 943 aaKnown RBP19.82■□□□□ 0.76
VPS28-213ENST00000530983 MYLK4Q86YV6 388 aaPredicted RBP19.82■□□□□ 0.76
VPS28-213ENST00000530983 WDR75Q8IWA0 830 aaKnown RBP19.82■□□□□ 0.76
VPS28-213ENST00000530983 ARNTL2Q8WYA1 636 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 SIKE1Q9BRV8 207 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 CPSF2Q9P2I0 782 aaKnown RBP19.82■□□□□ 0.76
VPS28-213ENST00000530983 DNAJC16Q9Y2G8 782 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 ADM5C9JUS6 153 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 PLIN3O60664 434 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 LCP1P13796 627 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 CCDC130P13994 396 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 KCNA4P22459 653 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 FDFT1P37268 417 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 LAMC2Q13753 1193 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 RABGAP1LQ5R372 815 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 LRRC8BQ6P9F7 803 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 ATG14Q6ZNE5 492 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 ARMCX2Q7L311 632 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 COLGALT1Q8NBJ5 622 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 C18orf25Q96B23 403 aaPredicted RBP19.82■□□□□ 0.76
VPS28-213ENST00000530983 ZNF184Q99676 751 aaPredicted RBP19.82■□□□□ 0.76
VPS28-213ENST00000530983 SORCS3Q9UPU3 1222 aa19.82■□□□□ 0.76
VPS28-213ENST00000530983 GLRA3O75311 464 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 CIB2O75838 187 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 PRKCGP05129 697 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 ANPEPP15144 967 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 ADORA2BP29275 332 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 SLC1A6P48664 564 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 SESN2P58004 480 aaPredicted RBP19.81■□□□□ 0.76
VPS28-213ENST00000530983 BST2Q10589 180 aaKnown RBP19.81■□□□□ 0.76
VPS28-213ENST00000530983 PCLAFQ15004 111 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 ZRSR2Q15696 482 aaKnown RBP19.81■□□□□ 0.76
VPS28-213ENST00000530983 RNF220Q5VTB9 566 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 UNC93AQ86WB7 457 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 GALNT15Q8N3T1 639 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 NETO2Q8NC67 525 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 SNTG2Q9NY99 539 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 ANGPTL2Q9UKU9 493 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 MEI4A8MW99 385 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 HACD1B0YJ81 288 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 MFSD11O43934 449 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 C6orf222P0C671 652 aaPredicted RBP19.81■□□□□ 0.76
VPS28-213ENST00000530983 MGAT1P26572 445 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 RPL34P49207 117 aaKnown RBP19.81■□□□□ 0.76
VPS28-213ENST00000530983 ZBTB6Q15916 424 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 OR52E8Q6IFG1 317 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 MAMDC4Q6UXC1 1216 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 ANKRD52Q8NB46 1076 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 C16orf70Q9BSU1 422 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 SOX13Q9UN79 622 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 COL1A2P08123 1366 aa19.81■□□□□ 0.76
VPS28-213ENST00000530983 SCNN1AP37088 669 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 C1orf146Q5VVC0 180 aa19.8■□□□□ 0.76
VPS28-213ENST00000530983 TAPT1Q6NXT6 567 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms