RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 ARL13BQ3SXY8 428 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 MAP9Q49MG5 647 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 ARHGAP15Q53QZ3 475 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.72□□□□□ -1.97
CD44-216ENST00000525293 CCDC144NLQ6NUI1 221 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 USP17L6PQ6QN14 398 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 KYAT3Q6YP21 454 aaKnown RBP2.72□□□□□ -1.97
CD44-216ENST00000525293 FAM57BQ71RH2 274 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 UEVLDQ8IX04 471 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 MMP21Q8N119 569 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 TXLNBQ8N3L3 684 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 MPLKIPQ8TAP9 179 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 BCAS4Q8TDM0 211 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 ANP32BQ92688 251 aaKnown RBP2.72□□□□□ -1.97
CD44-216ENST00000525293 SLC39A13Q96H72 371 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 SNX27Q96L92 541 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 PAGR1Q9BTK6 254 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 SARGQ9BW04 601 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 GATA5Q9BWX5 397 aaPredicted RBP2.72□□□□□ -1.97
CD44-216ENST00000525293 MAN2B2Q9Y2E5 1009 aa2.72□□□□□ -1.97
CD44-216ENST00000525293 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 A0A1W2PPC1 479 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 A0A1W2PPC4 97 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 B4DGG1 531 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 APAF1O14727 1248 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 IPO8O15397 1037 aaKnown RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 UGDHO60701 494 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 MYL3P08590 195 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 SRGAP2BP0DMP2 458 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 HARSP12081 509 aaKnown RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 PECAM1P16284 738 aaPredicted RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 MATN1P21941 496 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 NDUFS1P28331 727 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 GABRB3P28472 473 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 SLC5A2P31639 672 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 STAT6P42226 847 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 AGTR2P50052 363 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 ZNF84P51523 738 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 SLC12A2P55011 1212 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 B4GALNT1Q00973 533 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 MAP2K1Q02750 393 aaPredicted RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 IFIT5Q13325 482 aaKnown RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 ATP1A4Q13733 1029 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 RAPGEF1Q13905 1077 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 DHX8Q14562 1220 aaKnown RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 ZRSR2Q15696 482 aaKnown RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 LONRF1Q17RB8 773 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 MANEAQ5SRI9 462 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 HIBCHQ6NVY1 386 aaPredicted RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 ACSM6Q6P461 480 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 TLDC1Q6P9B6 456 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 PIK3AP1Q6ZUJ8 805 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 TTC30AQ86WT1 665 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 RFX6Q8HWS3 928 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 CCAR1Q8IX12 1150 aaKnown RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 ADGRF4Q8IZF3 695 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 CLASRPQ8N2M8 674 aaKnown RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 PDILTQ8N807 584 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 OR52L2PQ8NGH6 319 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 OVCA2Q8WZ82 227 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 GJA10Q969M2 543 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 P2RY11Q96G91 374 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 EIF3CQ99613 913 aaKnown RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 TTLL2Q9BWV7 592 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 NAA15Q9BXJ9 866 aaKnown RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 RNF26Q9BY78 433 aaPredicted RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 DDX24Q9GZR7 859 aaKnown RBP eCLIP2.71□□□□□ -1.98
CD44-216ENST00000525293 FAM234AQ9H0X4 552 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 MOV10Q9HCE1 1003 aaKnown RBP2.71□□□□□ -1.98
CD44-216ENST00000525293 TMEM8AQ9HCN3 771 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 CHST12Q9NRB3 414 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 RXFP3Q9NSD7 469 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 SWAP70Q9UH65 585 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 COG5Q9UP83 839 aa2.71□□□□□ -1.98
CD44-216ENST00000525293 IGLV5-39A0A0G2JS06 123 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 FAM234BA2RU67 622 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 OR2W5A6NFC9 320 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 ZNF814B7Z6K7 855 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 F8W810 466 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 M0QZQ0 153 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 PMM2O15305 246 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 CTIFO43310 598 aaKnown RBP2.7□□□□□ -1.98
CD44-216ENST00000525293 NCK2O43639 380 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 NDUFB8O95169 186 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 OAZ2O95190 189 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 VIPP01282 170 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 ALPLP05186 524 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 ENO1P06733 434 aaKnown RBP2.7□□□□□ -1.98
CD44-216ENST00000525293 LDHCP07864 332 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 AKR1A1P14550 325 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 HOXB6P17509 224 aaKnown RBP2.7□□□□□ -1.98
CD44-216ENST00000525293 EGR1P18146 543 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 CD53P19397 219 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 TFEBP19484 476 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 TNFRSF1BP20333 461 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 CCKARP32238 428 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 IL6STP40189 918 aaPredicted RBP2.7□□□□□ -1.98
CD44-216ENST00000525293 SOX2P48431 317 aa2.7□□□□□ -1.98
CD44-216ENST00000525293 POU5F1Q01860 360 aaKnown RBP2.7□□□□□ -1.98
CD44-216ENST00000525293 PMS2P11Q13670 270 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms