RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 MPOP05164 745 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 IL6P05231 212 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 GPC1P35052 558 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 FEN1P39748 380 aaKnown RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 SKIV2L2P42285 1042 aaKnown RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 PHF21BQ96EK2 531 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 WDCPQ9H6R7 721 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 UBA2Q9UBT2 640 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 LIMD1Q9UGP4 676 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 LSM7Q9UK45 103 aaKnown RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 EFCAB10A6NFE3 127 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 ERI2A8K979 691 aaKnown RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 RGL2O15211 777 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 MED24O75448 989 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 ANXA11P50995 505 aaKnown RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 HK2P52789 917 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 POLD3Q15054 466 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 GSTA3Q16772 222 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 PRAMEF18Q5VWM3 479 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 FAM228AQ86W67 206 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 FBXW8Q8N3Y1 598 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 SPPL2AQ8TCT8 520 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 GPRASP2Q96D09 838 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 CHID1Q9BWS9 393 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 UBXN6Q9BZV1 441 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 PRDM5Q9NQX1 630 aaPredicted RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 CCDC167Q9P0B6 97 aa13.61□□□□□ -0.23
TCOF1-214ENST00000515035 DRG1Q9Y295 367 aaKnown RBP13.61□□□□□ -0.23
TCOF1-214ENST00000515035 FGFR3P22607 806 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 ORC1Q13415 861 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 CAMK1DQ8IU85 385 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 CD302Q8IX05 232 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 EIF1ADQ8N9N8 165 aaKnown RBP13.6□□□□□ -0.23
TCOF1-214ENST00000515035 BHLHE22Q8NFJ8 381 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-214ENST00000515035 C17orf75Q9HAS0 396 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 KCNH7Q9NS40 1196 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 MSH4O15457 936 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 FAAP100Q0VG06 881 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 ZSWIM7Q19AV6 140 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 NET1Q7Z628 596 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-214ENST00000515035 EPHX4Q8IUS5 362 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 EMC1Q8N766 993 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 OR7A2PQ8NGA2 310 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 ZNF512Q96ME7 567 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-214ENST00000515035 PLEKHG4BQ96PX9 1271 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 SLC25A23Q9BV35 468 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 GANQ9H2C0 597 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 FAM220BPB1ANY3 271 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 S100A9P06702 114 aaKnown RBP13.6□□□□□ -0.23
TCOF1-214ENST00000515035 ETS1P14921 441 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 NT5DC3Q86UY8 548 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 TAS1R2Q8TE23 839 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 LENG1Q96BZ8 264 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-214ENST00000515035 UGT2B28Q9BY64 529 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 FHDC1Q9C0D6 1143 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-214ENST00000515035 MGAT4DA6NG13 374 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 CBFA2T3O75081 653 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 ABCB1P08183 1280 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-214ENST00000515035 ALFQ53S48 1182 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 VN1R5Q7Z5H4 357 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 KRCC1Q9NPI7 259 aaPredicted RBP13.6□□□□□ -0.23
TCOF1-214ENST00000515035 EHD3Q9NZN3 535 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 GTF2A1LQ9UNN4 478 aa13.6□□□□□ -0.23
TCOF1-214ENST00000515035 ETS2P15036 469 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 JAK1P23458 1154 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 GCLCP48506 637 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-214ENST00000515035 GIT2Q14161 759 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 SEZ6Q53EL9 994 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 RNF43Q68DV7 783 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 RBM44Q6ZP01 1051 aaKnown RBP13.59□□□□□ -0.23
TCOF1-214ENST00000515035 CINPQ9BW66 212 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-214ENST00000515035 DPY30Q9C005 99 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 NMRK2Q9NPI5 230 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 AP4E1Q9UPM8 1137 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 MEGF6O75095 1541 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 A0A096LPK6 155 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 IDH3BO43837 385 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 JCHAINP01591 159 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 SNX17Q15036 470 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 FAM126BQ8IXS8 530 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 MYO1HQ8N1T3 1032 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 COLGALT1Q8NBJ5 622 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 QKIQ96PU8 341 aaKnown RBP eCLIP13.59□□□□□ -0.23
TCOF1-214ENST00000515035 VANGL2Q9ULK5 521 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 RPA3P35244 121 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-214ENST00000515035 PRKAA2P54646 552 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 IER5Q5VY09 327 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 DHDDSQ86SQ9 333 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 DDX53Q86TM3 631 aaKnown RBP13.59□□□□□ -0.23
TCOF1-214ENST00000515035 PTPRHQ9HD43 1115 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 RWDD3Q9Y3V2 267 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 VDRP11473 427 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 FCGRTP55899 365 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 ST8SIA6P61647 398 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 SLC25A3Q00325 362 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 SFSWAPQ12872 951 aaKnown RBP13.59□□□□□ -0.23
TCOF1-214ENST00000515035 SLFN11Q7Z7L1 901 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 C8orf59Q8N0T1 100 aaPredicted RBP13.59□□□□□ -0.23
TCOF1-214ENST00000515035 POC5Q8NA72 575 aa13.59□□□□□ -0.23
TCOF1-214ENST00000515035 SEMA4DQ92854 862 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms