RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 APODP05090 189 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 GRIA2P42262 883 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 TNFRSF4P43489 277 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 SLC6A11P48066 632 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 FZD5Q13467 585 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 CCINQ13939 588 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 FAM133BQ5BKY9 247 aaKnown RBP14.79□□□□□ -0.04
NUP54-216ENST00000514901 PIK3R6Q5UE93 754 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 OTUD1Q5VV17 481 aaPredicted RBP14.79□□□□□ -0.04
NUP54-216ENST00000514901 FYB2Q5VWT5 728 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 FSTL4Q6MZW2 842 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 TRNP1Q6NT89 227 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.79□□□□□ -0.04
NUP54-216ENST00000514901 NAT16Q8N8M0 369 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 TMEM105Q8N8V8 129 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 MCEEQ96PE7 176 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 PANX2Q96RD6 677 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 PRRX2Q99811 253 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 CNPY3Q9BT09 278 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 PIGVQ9NUD9 493 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 FBXO10Q9UK96 956 aa14.79□□□□□ -0.04
NUP54-216ENST00000514901 ZNF318Q5VUA4 2279 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 GOLGA6L6A8MZA4 724 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 TULP3O75386 442 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 DCNP07585 359 aaKnown RBP14.78□□□□□ -0.04
NUP54-216ENST00000514901 TFE3P19532 575 aaPredicted RBP14.78□□□□□ -0.04
NUP54-216ENST00000514901 VCPP55072 806 aaKnown RBP14.78□□□□□ -0.04
NUP54-216ENST00000514901 RPL7AP62424 266 aaKnown RBP14.78□□□□□ -0.04
NUP54-216ENST00000514901 ATP11AP98196 1134 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 ARL13BQ3SXY8 428 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 MS4A13Q5J8X5 152 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 C10orf76Q5T2E6 689 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 NADSYN1Q6IA69 706 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 GRAMD4Q6IC98 578 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 MAMSTRQ6ZN01 415 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 HJURPQ8NCD3 748 aaPredicted RBP14.78□□□□□ -0.04
NUP54-216ENST00000514901 KCNV2Q8TDN2 545 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 FNIP1Q8TF40 1166 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 C1orf74Q96LT6 269 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 HAPLN3Q96S86 360 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 CHP1Q99653 195 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 NCAPGQ9BPX3 1015 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 TKTL2Q9H0I9 626 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 CHRDQ9H2X0 955 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 FBRSL1Q9HCM7 1045 aaKnown RBP14.78□□□□□ -0.04
NUP54-216ENST00000514901 ARHGEF4Q9NR80 690 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 DNAJC17Q9NVM6 304 aaKnown RBP14.78□□□□□ -0.04
NUP54-216ENST00000514901 DLGAP2Q9P1A6 1054 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 CALCOCO1Q9P1Z2 691 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 NENFQ9UMX5 172 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 MIA3Q5JRA6 1907 aa14.78□□□□□ -0.04
NUP54-216ENST00000514901 GOLGA6L7A0A1B0GV03 622 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 TBC1D3BA6NDS4 549 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 TMEM191CA6NGB0 347 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 F5H5T6 163 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 TSPAN3O60637 253 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 ATG13O75143 517 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 PAGE1O75459 146 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 KAT7O95251 611 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 GJB6O95452 261 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 EGFP01133 1207 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 CYP1A2P05177 515 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 CISD3P0C7P0 127 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 TACR2P21452 398 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 SLC6A4P31645 630 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 DGKGP49619 791 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 GALCP54803 685 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 GFPT1Q06210 699 aaPredicted RBP14.77□□□□□ -0.05
NUP54-216ENST00000514901 E2F5Q15329 346 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 C15orf59Q2T9L4 293 aaPredicted RBP14.77□□□□□ -0.05
NUP54-216ENST00000514901 RABGAP1LQ5R372 815 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 TTC39BQ5VTQ0 682 aaPredicted RBP14.77□□□□□ -0.05
NUP54-216ENST00000514901 RFWD3Q6PCD5 774 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 C12orf40Q86WS4 652 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 CHSY1Q86X52 802 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 CCDC117Q8IWD4 279 aaPredicted RBP14.77□□□□□ -0.05
NUP54-216ENST00000514901 CCDC170Q8IYT3 715 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 DTWD2Q8NBA8 298 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 FAM172AQ8WUF8 416 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 BHMTQ93088 406 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 PRMT1Q99873 361 aaKnown RBP14.77□□□□□ -0.05
NUP54-216ENST00000514901 ADAM33Q9BZ11 813 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 KCNH6Q9H252 994 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 PLK2Q9NYY3 685 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 MYO1AQ9UBC5 1043 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 SLC27A6Q9Y2P4 619 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 CACNA1IQ9P0X4 2223 aa14.77□□□□□ -0.05
NUP54-216ENST00000514901 TIMM44O43615 452 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 TBL1XO60907 577 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 H2AFZP0C0S5 128 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 PSMA2P25787 234 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 HOXD9P28356 352 aaPredicted RBP14.76□□□□□ -0.05
NUP54-216ENST00000514901 ADRA1BP35368 520 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 AIF1P55008 147 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 MRPS21P82921 87 aaKnown RBP14.76□□□□□ -0.05
NUP54-216ENST00000514901 AUHQ13825 339 aaKnown RBP14.76□□□□□ -0.05
NUP54-216ENST00000514901 ACAP1Q15027 740 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 CDO1Q16878 200 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 RAP1GAP2Q684P5 730 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 RNF43Q68DV7 783 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms