RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 PGFP49763 221 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 CLCN6P51797 869 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 NRG1Q02297 640 aaPredicted RBP16.54■□□□□ 0.24
NUP54-214ENST00000514307 GPM6BQ13491 265 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 PAFAH1B3Q15102 231 aaKnown RBP16.54■□□□□ 0.24
NUP54-214ENST00000514307 PDK1Q15118 436 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 NOMO1Q15155 1222 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 OASLQ15646 514 aaKnown RBP16.54■□□□□ 0.24
NUP54-214ENST00000514307 RAB30Q15771 203 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 C9orf50Q5SZB4 431 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 NUGGCQ68CJ6 796 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 HDXQ7Z353 690 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 PCGF5Q86SE9 256 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 CDKL3Q8IVW4 592 aaPredicted RBP16.54■□□□□ 0.24
NUP54-214ENST00000514307 LZTR1Q8N653 840 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 AZIN2Q96A70 460 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 RETREG1Q9H6L5 497 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 CATSPERBQ9H7T0 1116 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 MTRF1LQ9UGC7 380 aaKnown RBP16.54■□□□□ 0.24
NUP54-214ENST00000514307 NUDT5Q9UKK9 219 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 SNX24Q9Y343 169 aa16.54■□□□□ 0.24
NUP54-214ENST00000514307 BCLAF3A2AJT9 711 aaKnown RBP16.53■□□□□ 0.24
NUP54-214ENST00000514307 H3BNC9 293 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 FGF10O15520 208 aaPredicted RBP16.53■□□□□ 0.24
NUP54-214ENST00000514307 SPATA31D3P0C874 917 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 MX2P20592 715 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 EPHB2P29323 1055 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 SERPINB6P35237 376 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 HARS2P49590 506 aaKnown RBP16.53■□□□□ 0.24
NUP54-214ENST00000514307 SEMA3BQ13214 749 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 PPM1LQ5SGD2 360 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 PLPP4Q5VZY2 271 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 CEP128Q6ZU80 1094 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 SPATA31D4Q6ZUB0 917 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 MIB1Q86YT6 1006 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 SNF8Q96H20 258 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 FCRL2Q96LA5 508 aaPredicted RBP16.53■□□□□ 0.24
NUP54-214ENST00000514307 DDX50Q9BQ39 737 aaKnown RBP16.53■□□□□ 0.24
NUP54-214ENST00000514307 TRIM31Q9BZY9 425 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 LMAN2LQ9H0V9 348 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 DPH5Q9H2P9 285 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 ARHGEF4Q9NR80 690 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 SAE1Q9UBE0 346 aaPredicted RBP16.53■□□□□ 0.24
NUP54-214ENST00000514307 ANAPC5Q9UJX4 755 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 NFU1Q9UMS0 254 aa16.53■□□□□ 0.24
NUP54-214ENST00000514307 STK10O94804 968 aaKnown RBP16.52■□□□□ 0.24
NUP54-214ENST00000514307 TBX18O95935 607 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 CA3P07451 260 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 SRGAP2BP0DMP2 458 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 PFKLP17858 780 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 ERCC2P18074 760 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 SLC11A2P49281 568 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 DPYSQ14117 519 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 BEND6Q5SZJ8 279 aaPredicted RBP16.52■□□□□ 0.24
NUP54-214ENST00000514307 PRPF38BQ5VTL8 546 aaKnown RBP16.52■□□□□ 0.24
NUP54-214ENST00000514307 RWDD4Q6NW29 188 aaKnown RBP16.52■□□□□ 0.24
NUP54-214ENST00000514307 MRPS31Q92665 395 aaKnown RBP16.52■□□□□ 0.24
NUP54-214ENST00000514307 TBC1D31Q96DN5 1066 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 GCNAQ96QF7 691 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 FAM118BQ9BPY3 351 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 TRIM51Q9BSJ1 452 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 MAGEB5Q9BZ81 275 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 FOXP3Q9BZS1 431 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 ACBD3Q9H3P7 528 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 CCSER2Q9H7U1 834 aa16.52■□□□□ 0.24
NUP54-214ENST00000514307 CLUHO75153 1309 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 ESYT3A0FGR9 886 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 GRXCR1A8MXD5 290 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 SMAPO00193 183 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 PPP1R12AO14974 1030 aaPredicted RBP16.51■□□□□ 0.23
NUP54-214ENST00000514307 GRM6O15303 877 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 MSI1O43347 362 aaKnown RBP16.51■□□□□ 0.23
NUP54-214ENST00000514307 F11P03951 625 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 C8AP07357 584 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 HNRNPA1P09651 372 aaKnown RBP eCLIP16.51■□□□□ 0.23
NUP54-214ENST00000514307 PECAM1P16284 738 aaPredicted RBP16.51■□□□□ 0.23
NUP54-214ENST00000514307 PTPN2P17706 415 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 CDC25CP30307 473 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 PLTPP55058 493 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 NPNTQ6UXI9 565 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 ZC3H18Q86VM9 953 aaKnown RBP16.51■□□□□ 0.23
NUP54-214ENST00000514307 LRRC49Q8IUZ0 686 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 LEMD2Q8NC56 503 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 AENQ8WTP8 325 aaKnown RBP16.51■□□□□ 0.23
NUP54-214ENST00000514307 TFB1MQ8WVM0 346 aaKnown RBP16.51■□□□□ 0.23
NUP54-214ENST00000514307 CAVIN3Q969G5 261 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 PLD4Q96BZ4 506 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 TMEM121Q9BTD3 319 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 PCDH9Q9HC56 1237 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 TMPRSS4Q9NRS4 437 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 NEU2Q9Y3R4 380 aa16.51■□□□□ 0.23
NUP54-214ENST00000514307 SOBPA7XYQ1 873 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 HIDE1A8MVS5 230 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 FAM72CH0Y354 149 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 DCLK1O15075 740 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 MTSS1O43312 755 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 XYLBO75191 536 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 LRIG2O94898 1065 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 MOCS2O96007 188 aaPredicted RBP16.5■□□□□ 0.23
NUP54-214ENST00000514307 IFNB1P01574 187 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms