RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ROR2Q01974 943 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 TUBB3Q13509 450 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 CUL3Q13618 768 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 SFT2D3Q587I9 215 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 MAVSQ7Z434 540 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 PHTF2Q8N3S3 785 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 CCDC185Q8N715 623 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 COLGALT1Q8NBJ5 622 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 OXCT2Q9BYC2 517 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 S100A14Q9HCY8 104 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 PRMT7Q9NVM4 692 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 TXNP10599 105 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 ETS2P15036 469 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 CD1EP15812 388 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 EDNRBP24530 442 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 GLRA4Q5JXX5 417 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 RABGAP1LQ5R372 815 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 CELF3Q5SZQ8 465 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 ARCQ7LC44 396 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 PPP4R1Q8TF05 950 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 ATP2A3Q93084 1043 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 AZIN2Q96A70 460 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 CSPG4P5Q96PW8 444 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 PDZD7Q9H5P4 517 aa9.53□□□□□ -0.88
LIMCH1-215ENST00000512632 E9PBE3 544 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 NFKBIEO00221 500 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 KLHL41O60662 606 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 GCATO75600 419 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 VAV1P15498 845 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 AOC1P19801 751 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 IDH3AP50213 366 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 STILQ15468 1287 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 TRIP10Q15642 601 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 KYAT3Q6YP21 454 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 TRPM4Q8TD43 1214 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 ZNF670Q9BS34 389 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 GGA3Q9NZ52 723 aa9.52□□□□□ -0.88
LIMCH1-215ENST00000512632 ATICP31939 592 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 MSX2P35548 267 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 MAGEA3P43357 314 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 PCLAFQ15004 111 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 SOWAHAQ2M3V2 549 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 TP53INP2Q8IXH6 220 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 HTR3CQ8WXA8 447 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 CDKL2Q92772 493 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 FAM149B1Q96BN6 582 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 PDP2Q9P2J9 529 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 ADAMTS6Q9UKP5 1117 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 COL11A1P12107 1806 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 GOLGA8QA0A0J9YX86 632 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 A0A1B0GVG6 124 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 GOLGA8OA6NCC3 632 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 GOLGA8NF8WBI6 632 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 BUD23O43709 281 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 GAS2O43903 313 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 KLHL2O95198 593 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 ITGA2BP08514 1039 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 RALBP11234 206 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 PEX2P28328 305 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 MAGEA6P43360 314 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 PGGT1BP53609 377 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 INHBEP58166 350 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 TMCO4Q5TGY1 634 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 PDPK2PQ6A1A2 396 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 PPP1R13LQ8WUF5 828 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 KCTD15Q96SI1 283 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 DPEP3Q9H4B8 488 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 ASB7Q9H672 318 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 HES2Q9Y543 173 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 NME7Q9Y5B8 376 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 KCNK1O00180 336 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 GLRA3O75311 464 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 FKBP6O75344 327 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 SERPINE1P05121 402 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 DESP17661 470 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 CRABP2P29373 138 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 PPP2R5DQ14738 602 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 GRAMD1BQ3KR37 738 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 FRMD7Q6ZUT3 714 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 DHDDSQ86SQ9 333 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 RIOX2Q8IUF8 465 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 NME8Q8N427 588 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 OR6Y1Q8NGX8 325 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 PPP2R3CQ969Q6 453 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 TBCBQ99426 244 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 MKS1Q9NXB0 559 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 MTMR10Q9NXD2 777 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 CPSF2Q9P2I0 782 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 RPS6KL1Q9Y6S9 549 aa9.52□□□□□ -0.89
LIMCH1-215ENST00000512632 CCDC78A2IDD5 438 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 SOCS7O14512 581 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 HBP1O60381 514 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 TPSB2P20231 275 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 GSTT1P30711 240 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 CCNIQ14094 377 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 TPSAB1Q15661 275 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 DLG2Q15700 870 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 GSTA3Q16772 222 aa9.51□□□□□ -0.89
LIMCH1-215ENST00000512632 PLD6Q8N2A8 252 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms