RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 AGO1Q9UL18 857 aaKnown RBP12.12□□□□□ -0.47
RNF4-216ENST00000511859 TPX2Q9ULW0 747 aaKnown RBP12.12□□□□□ -0.47
RNF4-216ENST00000511859 CLEC4EQ9ULY5 219 aa12.12□□□□□ -0.47
RNF4-216ENST00000511859 UBR5O95071 2799 aaPredicted RBP12.12□□□□□ -0.47
RNF4-216ENST00000511859 FAM47DPA6NHR8 397 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 PHACTR2O75167 634 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 MT-CO3P00414 261 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 WNT1P04628 370 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 FAM200BP0CF97 657 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 CORO1AP31146 461 aaKnown RBP12.11□□□□□ -0.47
RNF4-216ENST00000511859 GALCP54803 685 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 BNIP3Q12983 259 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 MPPE1Q53F39 396 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 SLC45A4Q5BKX6 768 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 ZNF667Q5HYK9 610 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 SFMBT2Q5VUG0 894 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 ZNF776Q68DI1 518 aaPredicted RBP12.11□□□□□ -0.47
RNF4-216ENST00000511859 KDM7AQ6ZMT4 941 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 DENND1CQ8IV53 801 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 KCNE4Q8WWG9 221 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 ZNF516Q92618 1163 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 CCDC127Q96BQ5 260 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 AASDHPPTQ9NRN7 309 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 FBXL12Q9NXK8 326 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 NAGPAQ9UK23 515 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 SSUH2Q9Y2M2 353 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 TEX15Q9BXT5 2789 aa12.11□□□□□ -0.47
RNF4-216ENST00000511859 TDRD6O60522 2096 aaKnown RBP12.1□□□□□ -0.47
RNF4-216ENST00000511859 A0A1W2PR77 199 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 LRRC72A6NJI9 287 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 HHLA1C9JL84 531 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 TLR4O00206 839 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 KLK10O43240 276 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 ATP5BP06576 529 aaKnown RBP12.1□□□□□ -0.47
RNF4-216ENST00000511859 P4HA1P13674 534 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 CCDC130P13994 396 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 KIF11P52732 1056 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 SNRPFP62306 86 aaKnown RBP12.1□□□□□ -0.47
RNF4-216ENST00000511859 CYP24A1Q07973 514 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 ZNF699Q32M78 642 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 CLEC20AQ6ZU45 233 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 GPRIN1Q7Z2K8 1008 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 CCDC186Q7Z3E2 898 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 UNC93AQ86WB7 457 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 FAM217AQ8IXS0 508 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 CCDC65Q8IXS2 484 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 GANCQ8TET4 914 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 CYB5D2Q8WUJ1 264 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 RSPH9Q9H1X1 276 aaPredicted RBP12.1□□□□□ -0.47
RNF4-216ENST00000511859 EBF2Q9HAK2 575 aa12.1□□□□□ -0.47
RNF4-216ENST00000511859 SPTAN1Q13813 2472 aaKnown RBP12.1□□□□□ -0.47
RNF4-216ENST00000511859 FLNCQ14315 2725 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 MAGEC1O60732 1142 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 RNASEH1O60930 286 aaKnown RBP12.09□□□□□ -0.47
RNF4-216ENST00000511859 DLDP09622 509 aaKnown RBP12.09□□□□□ -0.47
RNF4-216ENST00000511859 HLA-FP30511 346 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 TXLNAP40222 546 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 LSSP48449 732 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 CCR5P51681 352 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 AP3M2P53677 418 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 ZNF445P59923 1031 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 PROX2Q3B8N5 592 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 NCEH1Q6PIU2 408 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 CHST9Q7L1S5 443 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 KANSL1Q7Z3B3 1105 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 KIAA0907Q7Z7F0 614 aaPredicted RBP12.09□□□□□ -0.47
RNF4-216ENST00000511859 SCD5Q86SK9 330 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 ZNF366Q8N895 744 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 C12orf29Q8N999 325 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 XXYLT1Q8NBI6 393 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 OR2T34Q8NGX1 318 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 FAM117AQ9C073 453 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 PABPC3Q9H361 631 aaKnown RBP12.09□□□□□ -0.47
RNF4-216ENST00000511859 RASAL2Q9UJF2 1139 aa12.09□□□□□ -0.47
RNF4-216ENST00000511859 TLN1Q9Y490 2541 aaKnown RBP12.08□□□□□ -0.47
RNF4-216ENST00000511859 DOCK9Q9BZ29 2069 aa12.08□□□□□ -0.47
RNF4-216ENST00000511859 K7ENP7 123 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 EIF3DO15371 548 aaKnown RBP eCLIP12.08□□□□□ -0.48
RNF4-216ENST00000511859 STX6O43752 255 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 MPOP05164 745 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 HMBSP08397 361 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 HOXD9P28356 352 aaPredicted RBP12.08□□□□□ -0.48
RNF4-216ENST00000511859 HOXD13P35453 343 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 NDST1P52848 882 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 NXPH1P58417 271 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 EFEMP1Q12805 493 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 ZNF211Q13398 564 aaPredicted RBP12.08□□□□□ -0.48
RNF4-216ENST00000511859 COLEC12Q5KU26 742 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 INO80CQ6PI98 192 aaPredicted RBP12.08□□□□□ -0.48
RNF4-216ENST00000511859 XKR5Q6UX68 686 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 CCDC73Q6ZRK6 1079 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 PRICKLE2Q7Z3G6 844 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 ADIPOR2Q86V24 386 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 AHI1Q8N157 1196 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 MFSD2AQ8NA29 543 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 ZNF507Q8TCN5 953 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 CCDC97Q96F63 343 aaPredicted RBP12.08□□□□□ -0.48
RNF4-216ENST00000511859 SERAC1Q96JX3 654 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 DEPDC7Q96QD5 511 aa12.08□□□□□ -0.48
RNF4-216ENST00000511859 NEUROG2Q9H2A3 272 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms