RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 SLC39A13Q96H72 371 aa16.99■□□□□ 0.31
SF3A1-209ENST00000496189 C11orf70Q9BRQ4 267 aa16.99■□□□□ 0.31
SF3A1-209ENST00000496189 ADAM22Q9P0K1 906 aa16.99■□□□□ 0.31
SF3A1-209ENST00000496189 SLC27A6Q9Y2P4 619 aa16.99■□□□□ 0.31
SF3A1-209ENST00000496189 CACNA1IQ9P0X4 2223 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 MYOFQ9NZM1 2061 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 CCDC163A0A0D9SF12 145 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 KCNU1A8MYU2 1149 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 F5H5T6 163 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 NPC1O15118 1278 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 TBL1XO60907 577 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 GYPCP04921 128 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 CHRNB2P17787 502 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 MMP8P22894 467 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 CASP14P31944 242 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 PRKCIP41743 596 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 MRE11P49959 708 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 CENPCQ03188 943 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 DEUP1Q05D60 604 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 EIF4HQ15056 248 aaKnown RBP16.98■□□□□ 0.31
SF3A1-209ENST00000496189 CLEC16AQ2KHT3 1053 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 RABGAP1LQ5R372 815 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 RFWD3Q6PCD5 774 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 VPS36Q86VN1 386 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 CHPFQ8IZ52 775 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 ALLCQ8N6M5 410 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 SLC30A5Q8TAD4 765 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 WFIKKN2Q8TEU8 576 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 ZNHIT6Q9NWK9 470 aaKnown RBP16.98■□□□□ 0.31
SF3A1-209ENST00000496189 FBXO10Q9UK96 956 aa16.98■□□□□ 0.31
SF3A1-209ENST00000496189 FAM170AA1A519 330 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 K7ESF4 209 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 TIMM44O43615 452 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 GFRA3O60609 400 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 IGLV3-25P01717 112 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 NTSR1P30989 418 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 KIR2DL1P43626 348 aaPredicted RBP16.97■□□□□ 0.31
SF3A1-209ENST00000496189 FNTBP49356 437 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 SLC25A52Q3SY17 297 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 BRMS1LQ5PSV4 323 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 ACBD5Q5T8D3 534 aaPredicted RBP16.97■□□□□ 0.31
SF3A1-209ENST00000496189 PIK3R6Q5UE93 754 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 TTC39BQ5VTQ0 682 aaPredicted RBP16.97■□□□□ 0.31
SF3A1-209ENST00000496189 CEP68Q76N32 757 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 ALYREFQ86V81 257 aaKnown RBP16.97■□□□□ 0.31
SF3A1-209ENST00000496189 WDR5BQ86VZ2 330 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 MFN1Q8IWA4 741 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 IL17RCQ8NAC3 791 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 NELL1Q92832 810 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 MRFAP1L1Q96HT8 127 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 HHIPQ96QV1 700 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 PHOX2BQ99453 314 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 HINFPQ9BQA5 517 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 SELENOOQ9BVL4 669 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 CIPCQ9C0C6 399 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 HAUS4Q9H6D7 363 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 WDCPQ9H6R7 721 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 STIM2Q9P246 746 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 BCCIPQ9P287 314 aaKnown RBP eCLIP16.97■□□□□ 0.31
SF3A1-209ENST00000496189 STARD13Q9Y3M8 1113 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 CACNA1HO95180 2353 aa16.97■□□□□ 0.31
SF3A1-209ENST00000496189 TRIM24O15164 1050 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 AXIN1O15169 862 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 MOCS3O95396 460 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 SERPING1P05155 500 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 CISD3P0C7P0 127 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 UNGP13051 313 aaPredicted RBP16.96■□□□□ 0.31
SF3A1-209ENST00000496189 TDGF1P13385 188 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 HOXB2P14652 356 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 TACR2P21452 398 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 HOXD9P28356 352 aaPredicted RBP16.96■□□□□ 0.31
SF3A1-209ENST00000496189 SDC4P31431 198 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 ZNF75DP51815 510 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 MESP2Q0VG99 397 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 CDH18Q13634 790 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 CRY1Q16526 586 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 C2CD6Q53TS8 623 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 TDRD12Q587J7 1177 aaKnown RBP16.96■□□□□ 0.31
SF3A1-209ENST00000496189 FAM133BQ5BKY9 247 aaKnown RBP16.96■□□□□ 0.31
SF3A1-209ENST00000496189 RAP1GAP2Q684P5 730 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 ARCQ7LC44 396 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 TMC6Q7Z403 805 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 LGI2Q8N0V4 545 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 OR8K1Q8NGG5 319 aa16.96■□□□□ 0.31
SF3A1-209ENST00000496189 METTL5Q9NRN9 209 aaKnown RBP16.96■□□□□ 0.31
SF3A1-209ENST00000496189 GOLGA6L7A0A1B0GV03 622 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 H0Y626 953 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 GFRA2O00451 464 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 LILRB5O75023 590 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 ATP5BP06576 529 aaKnown RBP16.95■□□□□ 0.3
SF3A1-209ENST00000496189 KRT3P12035 628 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 SLC6A4P31645 630 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 C1QBPQ07021 282 aaKnown RBP16.95■□□□□ 0.3
SF3A1-209ENST00000496189 SIM2Q14190 667 aaPredicted RBP16.95■□□□□ 0.3
SF3A1-209ENST00000496189 STARD3Q14849 445 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 MS4A13Q5J8X5 152 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 EMC10Q5UCC4 262 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 PRR23BQ6ZRT6 265 aa16.95■□□□□ 0.3
SF3A1-209ENST00000496189 PHF13Q86YI8 300 aaPredicted RBP16.95■□□□□ 0.3
SF3A1-209ENST00000496189 CNGA4Q8IV77 575 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms