RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 ROPN1Q9HAT0 212 aaPredicted RBP10.62□□□□□ -0.71
HDAC3-214ENST00000495485 ABI2Q9NYB9 513 aaPredicted RBP10.62□□□□□ -0.71
HDAC3-214ENST00000495485 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.62□□□□□ -0.71
HDAC3-214ENST00000495485 PAK5Q9P286 719 aa10.62□□□□□ -0.71
HDAC3-214ENST00000495485 SLC12A6Q9UHW9 1150 aa10.62□□□□□ -0.71
HDAC3-214ENST00000495485 FBXW11Q9UKB1 542 aa10.62□□□□□ -0.71
HDAC3-214ENST00000495485 PLAAQ9Y263 795 aa10.62□□□□□ -0.71
HDAC3-214ENST00000495485 PATJQ8NI35 1801 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 BCLAF3A2AJT9 711 aaKnown RBP10.61□□□□□ -0.71
HDAC3-214ENST00000495485 YJEFN3A6XGL0 299 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 HMGB1P1B2RPK0 211 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-214ENST00000495485 E7ENQ6 273 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 RFXAPO00287 272 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 PPP1R12AO14974 1030 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-214ENST00000495485 EIF3HO15372 352 aaKnown RBP eCLIP10.61□□□□□ -0.71
HDAC3-214ENST00000495485 PAPLNO95428 1278 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 IVLP07476 585 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 KLRC2P26717 231 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 ATP5DP30049 168 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 HOXA9P31269 272 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 SERPINB6P35237 376 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 TUFMP49411 452 aaKnown RBP10.61□□□□□ -0.71
HDAC3-214ENST00000495485 YWHAGP61981 247 aaKnown RBP eCLIP10.61□□□□□ -0.71
HDAC3-214ENST00000495485 SARNPP82979 210 aaKnown RBP10.61□□□□□ -0.71
HDAC3-214ENST00000495485 SCAPQ12770 1279 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 GPS1Q13098 491 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 GPR17Q13304 367 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 ADAM15Q13444 863 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 RAB33AQ14088 237 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 PDK1Q15118 436 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 TRADDQ15628 312 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 P3H1Q32P28 736 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 ZC3H12AQ5D1E8 599 aaKnown RBP10.61□□□□□ -0.71
HDAC3-214ENST00000495485 ZDHHC24Q6UX98 284 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 CYP4V2Q6ZWL3 525 aaPredicted RBP10.61□□□□□ -0.71
HDAC3-214ENST00000495485 CENPUQ71F23 418 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 BNIPLQ7Z465 357 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 TADA2BQ86TJ2 420 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 LRRTM3Q86VH5 581 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 CCDC25Q86WR0 208 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 FAM131BQ86XD5 332 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 PPIL6Q8IXY8 311 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 ARFGAP2Q8N6H7 521 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 PLD5Q8N7P1 536 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 TSEN2Q8NCE0 465 aaKnown RBP10.61□□□□□ -0.71
HDAC3-214ENST00000495485 OR10T2Q8NGX3 314 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 HLA-CQ95604 372 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 HERPUD2Q9BSE4 406 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 TMEM121Q9BTD3 319 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 PPCSQ9HAB8 311 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 DDIT4Q9NX09 232 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 SHOC2Q9UQ13 582 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 NAALADL1Q9UQQ1 740 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 SCML2Q9UQR0 700 aa10.61□□□□□ -0.71
HDAC3-214ENST00000495485 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 SYNJ2BP-COX16A0A087WUM0 186 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 GOLGA6CA6NDK9 693 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 EEF2KO00418 725 aaKnown RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 POLR3GO15318 223 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 TEX28O15482 410 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 MTSS1O43312 755 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 TBC1D4O60343 1298 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 RNF40O75150 1001 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 CD48P09326 243 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 CNPP09543 421 aaKnown RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 NUDT17P0C025 328 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 GOLGA6DP0CG33 693 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 MX2P20592 715 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 IGFBP6P24592 240 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 CCR1P32246 355 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 IRS1P35568 1242 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 NRIP1P48552 1158 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 CXCR3P49682 368 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 KPNA1P52294 538 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 SLC5A3P53794 718 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 ARL4CP56559 192 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 TPI1P60174 286 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 ADCY2Q08462 1091 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 HYAL1Q12794 435 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 MMRN1Q13201 1228 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 KCNC3Q14003 757 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 TRIP13Q15645 432 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 RTP2Q5QGT7 225 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 CEP85LQ5SZL2 805 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 C6orf118Q5T5N4 469 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 HIBCHQ6NVY1 386 aaPredicted RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 C1orf228Q6PIY5 440 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 CCDC149Q6ZUS6 474 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 RELL1Q8IUW5 271 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 CNPY4Q8N129 248 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 ZCCHC9Q8N567 271 aaKnown RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 ZNF461Q8TAF7 563 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 FAM76AQ8TAV0 307 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 ATXN2LQ8WWM7 1075 aaKnown RBP10.6□□□□□ -0.71
HDAC3-214ENST00000495485 SPATA17Q96L03 361 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 NECTIN4Q96NY8 510 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 SERPINB11Q96P15 392 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 KLHL5Q96PQ7 755 aa10.6□□□□□ -0.71
HDAC3-214ENST00000495485 CSPG4P5Q96PW8 444 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms