RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 GAREM1Q9H706 876 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 ABCB8Q9NUT2 735 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 HESX1Q9UBX0 185 aa13.2□□□□□ -0.3
SKA1-205ENST00000494518 FNDC3AQ9Y2H6 1198 aaKnown RBP13.2□□□□□ -0.3
SKA1-205ENST00000494518 A0A1B0GVT2 93 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 A0A1W2PQ27 194 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 A0A1W2PQ64 194 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 TRIM49BA6NDI0 452 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 H0Y626 953 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 TAF4O00268 1085 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 NPC1O15118 1278 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 BCAT2O15382 392 aaPredicted RBP13.19□□□□□ -0.3
SKA1-205ENST00000494518 STX10O60499 249 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 TRIM16O95361 564 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 OXTRP30559 389 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 PRCPP42785 496 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 HARS2P49590 506 aaKnown RBP13.19□□□□□ -0.3
SKA1-205ENST00000494518 PMS1P54277 932 aaKnown RBP13.19□□□□□ -0.3
SKA1-205ENST00000494518 BST2Q10589 180 aaKnown RBP13.19□□□□□ -0.3
SKA1-205ENST00000494518 EIF4HQ15056 248 aaKnown RBP13.19□□□□□ -0.3
SKA1-205ENST00000494518 TRIP4Q15650 581 aaPredicted RBP13.19□□□□□ -0.3
SKA1-205ENST00000494518 MPPE1Q53F39 396 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 BSPRYQ5W0U4 402 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 PM20D1Q6GTS8 502 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 RFWD3Q6PCD5 774 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 FAM217AQ8IXS0 508 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 ZC3H3Q8IXZ2 948 aaKnown RBP13.19□□□□□ -0.3
SKA1-205ENST00000494518 OR2T3Q8NH03 318 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 WFDC5Q8TCV5 224 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 NUP58Q9BVL2 599 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 UBXN6Q9BZV1 441 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 LHX5Q9H2C1 402 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 MTG2Q9H4K7 406 aa13.19□□□□□ -0.3
SKA1-205ENST00000494518 DOCK9Q9BZ29 2069 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 GOLGA6L7A0A1B0GV03 622 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 GOLGA8CPA6NN73 597 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 METTL12A8MUP2 240 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 ACSL1P33121 698 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 MATKP42679 507 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 CSNK1EP49674 416 aaKnown RBP13.18□□□□□ -0.3
SKA1-205ENST00000494518 RING1Q06587 406 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 SCAPQ12770 1279 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 SLC14A1Q13336 389 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 HNRNPDQ14103 355 aaKnown RBP13.18□□□□□ -0.3
SKA1-205ENST00000494518 HLA-BQ31612 363 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 ANKRD40Q6AI12 368 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 SLCO6A1Q86UG4 719 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 MARCH9Q86YJ5 346 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 CADM4Q8NFZ8 388 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 CLEC4CQ8WTT0 213 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 TMA16Q96EY4 203 aaKnown RBP13.18□□□□□ -0.3
SKA1-205ENST00000494518 TSG101Q99816 390 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 SLC2A11Q9BYW1 496 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 ZDHHC5Q9C0B5 715 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 TM7SF3Q9NS93 570 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 OLA1Q9NTK5 396 aaKnown RBP13.18□□□□□ -0.3
SKA1-205ENST00000494518 STIM2Q9P246 746 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 GGA2Q9UJY4 613 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 PCOLCE2Q9UKZ9 415 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 LHX6Q9UPM6 363 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 HBS1LQ9Y450 684 aaKnown RBP13.18□□□□□ -0.3
SKA1-205ENST00000494518 KNTC1P50748 2209 aa13.18□□□□□ -0.3
SKA1-205ENST00000494518 URB1O60287 2271 aaKnown RBP13.18□□□□□ -0.3
SKA1-205ENST00000494518 O00370 1275 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 KCNK3O14649 394 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 TBL1XO60907 577 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 CER1O95813 267 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 PABPC1P11940 636 aaKnown RBP13.17□□□□□ -0.3
SKA1-205ENST00000494518 CD70P32970 193 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 ZNF132P52740 706 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 DAOAP59103 153 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 COL9A2Q14055 689 aaPredicted RBP13.17□□□□□ -0.3
SKA1-205ENST00000494518 MBLAC2Q68D91 279 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 ISM2Q6H9L7 571 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 C19orf48Q6RUI8 117 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 ADIPOR2Q86V24 386 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 UBR7Q8N806 425 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 ADAMTS14Q8WXS8 1223 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 TFAP2BQ92481 460 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 KAT5Q92993 513 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 FAXDC2Q96IV6 333 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 SCAND2PQ9GZW5 306 aaPredicted RBP13.17□□□□□ -0.3
SKA1-205ENST00000494518 BTBD3Q9Y2F9 522 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 IGSF10Q6WRI0 2623 aa13.17□□□□□ -0.3
SKA1-205ENST00000494518 M0QYV0 167 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 SLC16A3O15427 465 aaKnown RBP13.16□□□□□ -0.3
SKA1-205ENST00000494518 TIMM44O43615 452 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 CBFA2T3O75081 653 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 FSBPO95073 299 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 IGLV3-19P01714 112 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 VDRP11473 427 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 BRD2P25440 801 aaKnown RBP13.16□□□□□ -0.3
SKA1-205ENST00000494518 SLC6A4P31645 630 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 NUMBP49757 651 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 MCCD1P59942 119 aaPredicted RBP13.16□□□□□ -0.3
SKA1-205ENST00000494518 YWHAEP62258 255 aaKnown RBP13.16□□□□□ -0.3
SKA1-205ENST00000494518 RPS14P62263 151 aaKnown RBP13.16□□□□□ -0.3
SKA1-205ENST00000494518 CAMK2GQ13555 558 aaPredicted RBP13.16□□□□□ -0.3
SKA1-205ENST00000494518 PTPRNQ16849 979 aa13.16□□□□□ -0.3
SKA1-205ENST00000494518 KIF19Q2TAC6 998 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms