RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ARAP2Q8WZ64 1704 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CD4P01730 458 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RBL1P28749 1068 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GALNT4Q8N4A0 578 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MRPL1Q9BYD6 325 aaKnown RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SDCBP2Q9H190 292 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ASB7Q9H672 318 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DENND2DQ9H6A0 471 aaPredicted RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 AP4E1Q9UPM8 1137 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MTO1Q9Y2Z2 717 aaKnown RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 IPPQ9Y573 584 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 NRCAMQ92823 1304 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KIAA1551Q9HCM1 1747 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KRT75O95678 551 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ASGR1P07306 291 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LYNP07948 512 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 OGDHQ02218 1023 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CENPCQ03188 943 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LRRC6Q86X45 466 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 C17orf50Q8WW18 174 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ATP2A3Q93084 1043 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CNBD2Q96M20 576 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ULBP1Q9BZM6 244 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ST6GALNAC4Q9H4F1 302 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DDX56Q9NY93 547 aaKnown RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZC3H7BQ9UGR2 993 aaKnown RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ITGB1BP2Q9UKP3 347 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ZMYND8Q9ULU4 1186 aaPredicted RBP11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GABRQQ9UN88 632 aa11.06□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MYADML2A6NDP7 307 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MANSC4A6NHS7 340 aaPredicted RBP11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 COPEO14579 308 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EIF2B2P49770 351 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 AFF1P51825 1210 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RTP1P59025 263 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CNPY1Q3B7I2 92 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SV2CQ496J9 727 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 NXNQ6DKJ4 435 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CHADLQ6NUI6 762 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TSHZ1Q6ZSZ6 1077 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SLC4A11Q8NBS3 891 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TMEM40Q8WWA1 233 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 WWP1Q9H0M0 922 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 STARD7Q9NQZ5 370 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 APOBEC2Q9Y235 224 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TMA7Q9Y2S6 64 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DTNAQ9Y4J8 743 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TRIM17Q9Y577 477 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SNX10Q9Y5X0 201 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LPXNO60711 386 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PMPCBO75439 489 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EEF1B2P24534 225 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MTTPP55157 894 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 UNC45BQ8IWX7 931 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 THEM5Q8N1Q8 247 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EXD1Q8NHP7 514 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LGMNQ99538 433 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SERPINI1Q99574 410 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SHCBP1LQ9BZQ2 653 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PLEKHA5Q9HAU0 1116 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EPS15L1Q9UBC2 864 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SIX4Q9UIU6 781 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 NAALADL1Q9UQQ1 740 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SMIM31A0A1B0GVY4 71 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 EEF2KO00418 725 aaKnown RBP11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LRCH4O75427 683 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 NUDT17P0C025 328 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 GAD2Q05329 585 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DCAF4L1Q3SXM0 396 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TAPT1Q6NXT6 567 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 MON1BQ7L1V2 547 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TTC25Q96NG3 672 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 HERPUD2Q9BSE4 406 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CNPY3Q9BT09 278 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 LRMDAQ9H2I8 198 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KCNH4Q9UQ05 1017 aa11.05□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 A6NHS1 94 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ATXN8OSP0DMR3 200 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 DARSP14868 501 aaKnown RBP11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 KRT4P19013 534 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CLCNKBP51801 687 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FZD8Q9H461 694 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 FAM8A1Q9UBU6 413 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SLC27A5Q9Y2P5 690 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 NCANO14594 1321 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 POLR2AP24928 1970 aaKnown RBP11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 IQANK1A0A1B0GTG1 560 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 PSTPIP1O43586 416 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TSPAN3O60637 253 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SOAT2O75908 522 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 UNGP13051 313 aaPredicted RBP11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 CYP2F1P24903 491 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 SREBF2Q12772 1141 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TRMT5Q32P41 509 aaKnown RBP11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ARL13BQ3SXY8 428 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 RNF180Q86T96 592 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 ECHDC2Q86YB7 292 aa11.04□□□□□ -0.64
MSH5-SAPCD1-207ENST00000493662 TTC13Q8NBP0 860 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms