RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 HHLA1C9JL84 531 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 EIF3DO15371 548 aaKnown RBP eCLIP13.77□□□□□ -0.21
HDAC3-213ENST00000492506 FLRT2O43155 660 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 PLXNA2O75051 1894 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 PENKP01210 267 aaPredicted RBP13.77□□□□□ -0.21
HDAC3-213ENST00000492506 CCDC130P13994 396 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 COL5A1P20908 1838 aaPredicted RBP13.77□□□□□ -0.21
HDAC3-213ENST00000492506 ATP5C1P36542 298 aaKnown RBP13.77□□□□□ -0.21
HDAC3-213ENST00000492506 TXLNAP40222 546 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 ZNF132P52740 706 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 COPAP53621 1224 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 MFAP3P55082 362 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 TRPC3Q13507 836 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 STARD3Q14849 445 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 PTPRNQ16849 979 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 TUBB8Q3ZCM7 444 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 DNAJC21Q5F1R6 531 aaKnown RBP13.77□□□□□ -0.21
HDAC3-213ENST00000492506 ATL3Q6DD88 541 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 FAM173BQ6P4H8 233 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 KLHDC10Q6PID8 442 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 STXBP4Q6ZWJ1 553 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 GPRIN1Q7Z2K8 1008 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 ACOT1Q86TX2 421 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 PACS2Q86VP3 889 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 MGAQ8IWI9 3026 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 REXO1L1PQ8IX06 675 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 CEP57L1Q8IYX8 460 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 GPATCH11Q8N954 259 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 SLC2A14Q8TDB8 520 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 RHBDD1Q8TEB9 315 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 GOLGA1Q92805 767 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 BPIFA3Q9BQP9 254 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 FBXO44Q9H4M3 255 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.77□□□□□ -0.218e-13■■■■■ 88.1
HDAC3-213ENST00000492506 LSM7Q9UK45 103 aaKnown RBP13.77□□□□□ -0.21
HDAC3-213ENST00000492506 SUFUQ9UMX1 484 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 SCML2Q9UQR0 700 aa13.77□□□□□ -0.21
HDAC3-213ENST00000492506 A0A1B0GVT2 93 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 FAM149AA5PLN7 773 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 MAP2K7O14733 419 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 NPC1O15118 1278 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 MDM4O15151 490 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 CLIC2O15247 247 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 CYP26A1O43174 497 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 KLKB1P03952 638 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 OXTRP30559 389 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 CASP4P49662 377 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 CYP2J2P51589 502 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 MAP3K7CLP57077 242 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 IQCB1Q15051 598 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 SMAD1Q15797 465 aaKnown RBP13.76□□□□□ -0.21
HDAC3-213ENST00000492506 KIF19Q2TAC6 998 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 HSP90B2PQ58FF3 399 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 FYB2Q5VWT5 728 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 SPATS2Q86XZ4 545 aaKnown RBP13.76□□□□□ -0.21
HDAC3-213ENST00000492506 EGFL6Q8IUX8 553 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 CNPY4Q8N129 248 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 CRYBG2Q8N1P7 616 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 GALNT15Q8N3T1 639 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 XXYLT1Q8NBI6 393 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 SIPA1Q96FS4 1042 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 PIWIL1Q96J94 861 aaKnown RBP13.76□□□□□ -0.21
HDAC3-213ENST00000492506 TNIP3Q96KP6 325 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.76□□□□□ -0.21
HDAC3-213ENST00000492506 KBTBD4Q9NVX7 518 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 HMGXB4Q9UGU5 601 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.76□□□□□ -0.21
HDAC3-213ENST00000492506 NUDT5Q9UKK9 219 aa13.76□□□□□ -0.21
HDAC3-213ENST00000492506 GOLGA8CPA6NN73 597 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 C1QL1O75973 258 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 STC2O76061 302 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 VNN1O95497 513 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 PRB1P04280 392 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 C7P10643 843 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 SSR1P43307 286 aaKnown RBP13.75□□□□□ -0.21
HDAC3-213ENST00000492506 CSNK1EP49674 416 aaKnown RBP13.75□□□□□ -0.21
HDAC3-213ENST00000492506 CLDN10P78369 228 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 DNM1Q05193 864 aaKnown RBP13.75□□□□□ -0.21
HDAC3-213ENST00000492506 EHHADHQ08426 723 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 ORC1Q13415 861 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 E2F4Q16254 413 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 BMT2Q1RMZ1 405 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 ZNF699Q32M78 642 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 ZNF667Q5HYK9 610 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 SCARA5Q6ZMJ2 495 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 PDILTQ8N807 584 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 C12orf29Q8N999 325 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 PRCCQ92733 491 aaPredicted RBP13.75□□□□□ -0.21
HDAC3-213ENST00000492506 NUP58Q9BVL2 599 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 LCMT1Q9UIC8 334 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 CLEC4EQ9ULY5 219 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.75□□□□□ -0.21
HDAC3-213ENST00000492506 SNX11Q9Y5W9 270 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 MAST4O15021 2626 aa13.75□□□□□ -0.21
HDAC3-213ENST00000492506 ZNF462Q96JM2 2506 aa13.74□□□□□ -0.21
HDAC3-213ENST00000492506 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.74□□□□□ -0.21
HDAC3-213ENST00000492506 A0A1W2PQH9 124 aa13.74□□□□□ -0.21
HDAC3-213ENST00000492506 EIF4E1BA6NMX2 242 aaKnown RBP13.74□□□□□ -0.21
HDAC3-213ENST00000492506 CBFA2T2O43439 604 aa13.74□□□□□ -0.21
HDAC3-213ENST00000492506 TNFSF14O43557 240 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms