RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 MMRN2Q9H8L6 949 aa9.53□□□□□ -0.88
HDAC3-212ENST00000492407 SUN2Q9UH99 717 aa9.53□□□□□ -0.88
HDAC3-212ENST00000492407 TSPAN16Q9UKR8 245 aa9.53□□□□□ -0.88
HDAC3-212ENST00000492407 SCML1Q9UN30 329 aa9.53□□□□□ -0.88
HDAC3-212ENST00000492407 APOBEC2Q9Y235 224 aaKnown RBP9.53□□□□□ -0.88
HDAC3-212ENST00000492407 FRYQ5TBA9 3013 aa9.53□□□□□ -0.88
HDAC3-212ENST00000492407 TNRC6BQ9UPQ9 1833 aaKnown RBP9.53□□□□□ -0.88
HDAC3-212ENST00000492407 CFAP47Q6ZTR5 3102 aa9.53□□□□□ -0.88
HDAC3-212ENST00000492407 KCNJ18B7U540 433 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 P4HA2O15460 535 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 SH3BP5O60239 455 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 DFNA5O60443 496 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 CBFA2T3O75081 653 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 FBXO21O94952 628 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 SMC2O95347 1197 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 TOP3BO95985 862 aaKnown RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 CAPNS1P04632 268 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 TPM2P07951 284 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 HMBSP08397 361 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 DLDP09622 509 aaKnown RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 SPINK2P20155 84 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 HOXD9P28356 352 aaPredicted RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 MATKP42679 507 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 SSR1P43307 286 aaKnown RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 AFF3P51826 1226 aaKnown RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 CETN1Q12798 172 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 ARID5BQ14865 1188 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 SUZ12Q15022 739 aaKnown RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 CNGA2Q16280 664 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 GOLGA7BQ2TAP0 167 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 PKDCCQ504Y2 493 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 DCAF12L1Q5VU92 463 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 NUGGCQ68CJ6 796 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 MSANTD2Q6P1R3 559 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 BEND5Q7L4P6 421 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 FMNL3Q8IVF7 1028 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 SIX6OS1Q8N1H7 587 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 UBR7Q8N806 425 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 ZCCHC14Q8WYQ9 949 aaKnown RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 TATDN2Q93075 761 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 BHMTQ93088 406 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 HSFY1Q96LI6 401 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 CDC6Q99741 560 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 DDX50Q9BQ39 737 aaKnown RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 SLC6A17Q9H1V8 727 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 ARMCX3Q9UH62 379 aaPredicted RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 HOOK1Q9UJC3 728 aaKnown RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 KLK13Q9UKR3 277 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 PCOLCE2Q9UKZ9 415 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 TPX2Q9ULW0 747 aaKnown RBP9.52□□□□□ -0.89
HDAC3-212ENST00000492407 PCDH15Q96QU1 1955 aa9.52□□□□□ -0.89
HDAC3-212ENST00000492407 YJEFN3A6XGL0 299 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 E7ENQ6 273 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 O00370 1275 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 FLRT2O43155 660 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 IGLV3-27P01718 113 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 FTH1P19P0C7X4 201 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 PRKCHP24723 683 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 HLA-FP30511 346 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 PRCPP42785 496 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 SLC11A2P49281 568 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 DAOAP59103 153 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 NNTQ13423 1086 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 TEAD4Q15561 434 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 MEA1Q16626 185 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 CBWD6Q4V339 395 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 CBWD3Q5JTY5 395 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 CBWD5Q5RIA9 395 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 TCERG1LQ5VWI1 586 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 TMEM215Q68D42 235 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 USP30Q70CQ3 517 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 ADIPOR2Q86V24 386 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 FMR1NBQ8N0W7 255 aaPredicted RBP9.51□□□□□ -0.89
HDAC3-212ENST00000492407 CHCHD4Q8N4Q1 142 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 SLC35F5Q8WV83 523 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 SLC35C1Q96A29 364 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 TTC17Q96AE7 1141 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 CEP63Q96MT8 703 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 TIGD1Q96MW7 591 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 TRIM62Q9BVG3 475 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 LHX5Q9H2C1 402 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 GOLPH3LQ9H4A5 285 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 SGK2Q9HBY8 427 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 FSCN3Q9NQT6 498 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 GGA2Q9UJY4 613 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 CLEC4EQ9ULY5 219 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 ZZEF1O43149 2961 aa9.51□□□□□ -0.89
HDAC3-212ENST00000492407 PAPSS1O43252 624 aaPredicted RBP9.5□□□□□ -0.89
HDAC3-212ENST00000492407 SART1O43290 800 aaKnown RBP9.5□□□□□ -0.89
HDAC3-212ENST00000492407 PCDHGA12O60330 932 aa9.5□□□□□ -0.89
HDAC3-212ENST00000492407 DKK1O94907 266 aa9.5□□□□□ -0.89
HDAC3-212ENST00000492407 DNTTP04053 509 aa9.5□□□□□ -0.89
HDAC3-212ENST00000492407 ASLP04424 464 aa9.5□□□□□ -0.89
HDAC3-212ENST00000492407 PABPC1P11940 636 aaKnown RBP9.5□□□□□ -0.89
HDAC3-212ENST00000492407 CD19P15391 556 aa9.5□□□□□ -0.89
HDAC3-212ENST00000492407 POLR2EP19388 210 aaKnown RBP9.5□□□□□ -0.89
HDAC3-212ENST00000492407 CD27P26842 260 aa9.5□□□□□ -0.89
HDAC3-212ENST00000492407 MAOBP27338 520 aa9.5□□□□□ -0.89
HDAC3-212ENST00000492407 GRIA4P48058 902 aa9.5□□□□□ -0.89
HDAC3-212ENST00000492407 RPL34P49207 117 aaKnown RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms