RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PCDHAC1Q9H158 963 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 CERS4Q9HA82 394 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 PDGFCQ9NRA1 345 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 MYO1AQ9UBC5 1043 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 RNF7Q9UBF6 113 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 VPS4AQ9UN37 437 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 MAN2B2Q9Y2E5 1009 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 TMEM131LA2VDJ0 1609 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 SLIT2O94813 1529 aa2.52□□□□□ -2.01
HMGB1-208ENST00000490788 SMIM35A0A1B0GVV1 85 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 TCRBV5S1A1TA0A578 114 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 WIPF3A6NGB9 483 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 HNRNPDLO14979 420 aaKnown RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 FYB1O15117 783 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 CD63P08962 238 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 IFIT2P09913 472 aaKnown RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 TMIGD3P0DMS9 266 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 HARSP12081 509 aaKnown RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 SLC5A1P13866 664 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 MMP8P22894 467 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 MCM5P33992 734 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 PTGER1P34995 402 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 TBX4P57082 545 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 DEUP1Q05D60 604 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 BTKQ06187 659 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 NSUN2Q08J23 767 aaKnown RBP eCLIP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 SEMA3BQ13214 749 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 PMS2P11Q13670 270 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 TRIP6Q15654 476 aaKnown RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 CNGA3Q16281 694 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 FAM110CQ1W6H9 321 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 SUPT20HL1Q3ZLR7 823 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 IZUMO3Q5VZ72 239 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 HIBCHQ6NVY1 386 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 TLDC1Q6P9B6 456 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 SLC2A7Q6PXP3 512 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 CCDC28AQ8IWP9 274 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 DDX51Q8N8A6 666 aaKnown RBP eCLIP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 SUN3Q8TAQ9 357 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 BRI3BPQ8WY22 251 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 NAA15Q9BXJ9 866 aaKnown RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 PRSS22Q9GZN4 317 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 NUAK2Q9H093 628 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 ARFGAP3Q9NP61 516 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 ASIC5Q9NY37 505 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 KLHL13Q9P2N7 655 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 VPS51Q9UID3 782 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 ASAP1Q9ULH1 1129 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 ZMYND8Q9ULU4 1186 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 NAP1L2Q9ULW6 460 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 HEMK1Q9Y5R4 338 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 SLIT1O75093 1534 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 MYOM2P54296 1465 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 RPRD2Q5VT52 1461 aaKnown RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 KAT6AQ92794 2004 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 UBR1Q8IWV7 1749 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 ARHGEF28Q8N1W1 1705 aaKnown RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 MARF1Q9Y4F3 1742 aaKnown RBP2.51□□□□□ -2.01
HMGB1-208ENST00000490788 MST1RQ04912 1400 aa2.51□□□□□ -2.01
HMGB1-208ENST00000490788 POLR2AP24928 1970 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 COL15A1P39059 1388 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 TMEM2Q9UHN6 1383 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 SAMD9Q5K651 1589 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 CYP2D7A0A087X1C5 515 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 A0A1W2PPC4 97 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 FAM234BA2RU67 622 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 CGB1A6NKQ9 187 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 RASA4BC9J798 803 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 H3BNC9 293 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 RASA4O43374 803 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 FGF18O76093 207 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 NDST3O95803 873 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 LATS1O95835 1130 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 BMP15O95972 392 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 MATN1P21941 496 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 EEF1GP26641 437 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 SLC5A2P31639 672 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 GALNSP34059 522 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 IGHMBP2P38935 993 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 PBX1P40424 430 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 VPS41P49754 854 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 NEK3P51956 506 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 KRTAP10-6P60371 365 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 WDR5P61964 334 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 GPC5P78333 572 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 MAP2K1Q02750 393 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF91Q05481 1191 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 HDAC1Q13547 482 aaPredicted RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 CSHL1Q14406 222 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 KPNB1Q14974 876 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 ACOX1Q15067 660 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 MAPKAPK3Q16644 382 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 SLC5A9Q2M3M2 681 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 GLE1Q53GS7 698 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 ARHGAP15Q53QZ3 475 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 AWAT1Q58HT5 328 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 TMEM196Q5HYL7 178 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 EPHA10Q5JZY3 1008 aa2.5□□□□□ -2.01
HMGB1-208ENST00000490788 ARL6IP4Q66PJ3 421 aaKnown RBP2.5□□□□□ -2.01
HMGB1-208ENST00000490788 IL31Q6EBC2 164 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms