RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 NUDT5Q9UKK9 219 aa8.59□□□□□ -1.03
USP39-216ENST00000490193 AGO1Q9UL18 857 aaKnown RBP8.59□□□□□ -1.03
USP39-216ENST00000490193 ATMQ13315 3056 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 NYNRINQ9P2P1 1898 aaKnown RBP8.58□□□□□ -1.04
USP39-216ENST00000490193 FAM149AA5PLN7 773 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 C10orf142B7Z368 130 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 H0Y8X5 98 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 IKBKBO14920 756 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 PPP6R2O75170 966 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 SEMA4FO95754 770 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 CDK4P11802 303 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 CD27P26842 260 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 ADORA2BP29275 332 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 EIF2S3P41091 472 aaKnown RBP8.58□□□□□ -1.04
USP39-216ENST00000490193 DHRS13Q6UX07 377 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 SV2AQ7L0J3 742 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 KIAA0907Q7Z7F0 614 aaPredicted RBP8.58□□□□□ -1.04
USP39-216ENST00000490193 FAM124AQ86V42 546 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.58□□□□□ -1.04
USP39-216ENST00000490193 WFIKKN2Q8TEU8 576 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 SNX19Q92543 992 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 ELMO3Q96BJ8 720 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 NT5C1AQ9BXI3 368 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 DUSP16Q9BY84 665 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 CIPCQ9C0C6 399 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 BTBD1Q9H0C5 482 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 ZSCAN16Q9H4T2 348 aaPredicted RBP8.58□□□□□ -1.04
USP39-216ENST00000490193 CYP3A43Q9HB55 503 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 FTSJ1Q9UET6 329 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 RASAL2Q9UJF2 1139 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 CLEC4EQ9ULY5 219 aa8.58□□□□□ -1.04
USP39-216ENST00000490193 A0A1B0GTQ1 180 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 PLK4O00444 970 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 VILLO15195 856 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 SPTLC2O15270 562 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 C1SP09871 688 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 HOXD9P28356 352 aaPredicted RBP8.57□□□□□ -1.04
USP39-216ENST00000490193 HNF1BP35680 557 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 ZNF445P59923 1031 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 RPS14P62263 151 aaKnown RBP8.57□□□□□ -1.04
USP39-216ENST00000490193 RACK1P63244 317 aaKnown RBP8.57□□□□□ -1.04
USP39-216ENST00000490193 DLG4P78352 724 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 ARID5AQ03989 594 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 EFEMP1Q12805 493 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 RTP5Q14D33 572 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 TRIP4Q15650 581 aaPredicted RBP8.57□□□□□ -1.04
USP39-216ENST00000490193 MPPE1Q53F39 396 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 RAB41Q5JT25 222 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 KCNT1Q5JUK3 1230 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 C1orf220Q5T0J3 134 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 ZNF787Q6DD87 383 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 SPOPLQ6IQ16 392 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 CACUL1Q86Y37 369 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 DENND1CQ8IV53 801 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 ARHGAP18Q8N392 663 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 PIP4K2CQ8TBX8 421 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 SORCS1Q8WY21 1168 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 GOLGA1Q92805 767 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 JAKMIP2Q96AA8 810 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 PLD4Q96BZ4 506 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 DHX58Q96C10 678 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 UBXN6Q9BZV1 441 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 SGK2Q9HBY8 427 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 SLC39A2Q9NP94 309 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 MARCH2Q9P0N8 246 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 STOML2Q9UJZ1 356 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 STRIP2Q9ULQ0 834 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 MTMR6Q9Y217 621 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 ZNF462Q96JM2 2506 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 MGAQ8IWI9 3026 aa8.57□□□□□ -1.04
USP39-216ENST00000490193 ENC1O14682 589 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 MAPK13O15264 365 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 TLX3O43711 291 aaPredicted RBP8.56□□□□□ -1.04
USP39-216ENST00000490193 CUTAO60888 179 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 CLSTN1O94985 981 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 YEATS4O95619 227 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 LATS1O95835 1130 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 HLA-DRAP01903 254 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 DNTTP04053 509 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 PRB1P04280 392 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 IGHV4-34P06331 123 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 HMBSP08397 361 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 ITPKBP27987 946 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 HLA-FP30511 346 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 PIK3CAP42336 1068 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 BCAT1P54687 386 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 ENPEPQ07075 957 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 STK38Q15208 465 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 TTC31Q49AM3 519 aaPredicted RBP8.56□□□□□ -1.04
USP39-216ENST00000490193 FNDC3BQ53EP0 1204 aaKnown RBP8.56□□□□□ -1.04
USP39-216ENST00000490193 C6orf118Q5T5N4 469 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 PPP1R26Q5T8A7 1209 aaPredicted RBP8.56□□□□□ -1.04
USP39-216ENST00000490193 PM20D1Q6GTS8 502 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 SHC4Q6S5L8 630 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 LAYNQ6UX15 382 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 USP30Q70CQ3 517 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 ADIPOR2Q86V24 386 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 AHI1Q8N157 1196 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 CACTIN-AS1Q8N1I8 211 aa8.56□□□□□ -1.04
USP39-216ENST00000490193 SNIP1Q8TAD8 396 aaKnown RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms