RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 XYLT2Q9H1B5 865 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 VCX3BQ9H321 246 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 KDM4CQ9H3R0 1056 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 TMPRSS4Q9NRS4 437 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 MTO1Q9Y2Z2 717 aaKnown RBP13.59□□□□□ -0.23
HMGN1-216ENST00000486741 BUD23O43709 281 aaKnown RBP13.59□□□□□ -0.23
HMGN1-216ENST00000486741 SHOX2O60902 331 aaPredicted RBP13.59□□□□□ -0.23
HMGN1-216ENST00000486741 VAPBO95292 243 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 TPD52P55327 224 aaPredicted RBP13.59□□□□□ -0.23
HMGN1-216ENST00000486741 TWF1Q12792 350 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 MPP3Q13368 585 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 SLC1A5Q15758 541 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 OLFML2BQ68BL8 750 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 C4orf22Q6V702 233 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 ATXN2LQ8WWM7 1075 aaKnown RBP13.59□□□□□ -0.23
HMGN1-216ENST00000486741 APBA2Q99767 749 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 GRIN2DO15399 1336 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 TSPAN3O60637 253 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 CCR1P32246 355 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 CCDC142Q17RM4 750 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 RNASEH2BQ5TBB1 312 aaKnown RBP13.59□□□□□ -0.23
HMGN1-216ENST00000486741 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.59□□□□□ -0.23
HMGN1-216ENST00000486741 PCDH19Q8TAB3 1148 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 DUSP16Q9BY84 665 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 MAGEB5Q9BZ81 275 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 MYLK2Q9H1R3 596 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 SMPD4Q9NXE4 827 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 ADA2Q9NZK5 511 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 A0A0A0MRY4 1105 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 MTSS1O43312 755 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 TMEM63AO94886 807 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 STBD1O95210 358 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 GFAPP14136 432 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 TCN1P20061 433 aaPredicted RBP13.59□□□□□ -0.23
HMGN1-216ENST00000486741 MGAT5Q09328 741 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 PDCD2Q16342 344 aaPredicted RBP13.59□□□□□ -0.23
HMGN1-216ENST00000486741 DBN1Q16643 649 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 DDR2Q16832 855 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 RAB6CQ53S08 254 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 FAM35AQ86V20 835 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 UPF1Q92900 1129 aaKnown RBP eCLIP13.59□□□□□ -0.23
HMGN1-216ENST00000486741 P2RY11Q96G91 374 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 NSL1Q96IY1 281 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 SPATA13Q96N96 652 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 RAB6CQ9H0N0 254 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 MUC3BQ9H195 1237 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 ACSS3Q9H6R3 686 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 SLC27A5Q9Y2P5 690 aa13.59□□□□□ -0.23
HMGN1-216ENST00000486741 MSI1O43347 362 aaKnown RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 SKAP2O75563 359 aaPredicted RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 NR2C2P49116 596 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 ALDH7A1P49419 539 aaKnown RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 KCNJ2P63252 427 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 ANO4Q32M45 955 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 FSCBQ5H9T9 825 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 CDCA2Q69YH5 1023 aaPredicted RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 PTAR1Q7Z6K3 402 aaPredicted RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 STKLD1Q8NE28 680 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 SNX27Q96L92 541 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 ZMAT2Q96NC0 199 aaKnown RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 RXFP1Q9HBX9 757 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 MYO9BQ13459 2157 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 PHGDHO43175 533 aaKnown RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 ENO3P13929 434 aaPredicted RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 XPAP23025 273 aaPredicted RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 PTP4A2Q12974 167 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 C15orf39Q6ZRI6 1047 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 KIRREL3Q8IZU9 778 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 WDTC1Q8N5D0 677 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 APOPT1Q96IL0 206 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 RHOBTB2Q9BYZ6 727 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 VCXQ9H320 206 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 ACSS2Q9NR19 701 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 PADI3Q9ULW8 664 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 RUVBL2Q9Y230 463 aaKnown RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 ZC3H4Q9UPT8 1303 aaKnown RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 ARAP2Q8WZ64 1704 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 MAP3K7O43318 606 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 EDNRBP24530 442 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 DDIASQ8IXT1 998 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 POU5F2Q8N7G0 328 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 FNIP1Q8TF40 1166 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 TLCD1Q96CP7 247 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 ZNF670Q9BS34 389 aa13.58□□□□□ -0.24
HMGN1-216ENST00000486741 COL2A1P02458 1487 aaPredicted RBP13.58□□□□□ -0.24
HMGN1-216ENST00000486741 E5RI56 91 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 CHADO15335 359 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 NFKB1P19838 968 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 ECHS1P30084 290 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 RABGAP1LQ5R372 815 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 AGGF1Q8N302 714 aaeCLIP13.57□□□□□ -0.24
HMGN1-216ENST00000486741 MPP6Q9NZW5 540 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 CYTH4Q9UIA0 394 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 FAM237BA0A1B0GVD1 139 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 C2orf71A6NGG8 1288 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 E9PBE3 544 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 MFSD11O43934 449 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 KLHL41O60662 606 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 ANXA9O76027 345 aa13.57□□□□□ -0.24
HMGN1-216ENST00000486741 ASGR1P07306 291 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms