RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ACDQ96AP0 544 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 IQCDQ96DY2 449 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 CFAP57Q96MR6 1250 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 DDX50Q9BQ39 737 aaKnown RBP15.31■□□□□ 0.04
USP4-212ENST00000486549 SELENOOQ9BVL4 669 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 ADAM33Q9BZ11 813 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 PIGVQ9NUD9 493 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 RRN3Q9NYV6 651 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 CALCOCO1Q9P1Z2 691 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 STIM2Q9P246 746 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 SLC12A6Q9UHW9 1150 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 TMEM59LQ9UK28 342 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 CLEC4EQ9ULY5 219 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 CAPN11Q9UMQ6 739 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 LUC7L2Q9Y383 392 aaKnown RBP15.31■□□□□ 0.04
USP4-212ENST00000486549 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.31■□□□□ 0.043e-7■■□□□ 13.3
USP4-212ENST00000486549 R4GN57 208 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 ITIH6Q6UXX5 1313 aa15.31■□□□□ 0.04
USP4-212ENST00000486549 TYW5A2RUC4 315 aaKnown RBP15.3■□□□□ 0.04
USP4-212ENST00000486549 CHURC1-FNTBB4DL54 471 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 KLF8O95600 359 aaPredicted RBP15.3■□□□□ 0.04
USP4-212ENST00000486549 CISD3P0C7P0 127 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 SLC2A3P11169 496 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 HOXD9P28356 352 aaPredicted RBP15.3■□□□□ 0.04
USP4-212ENST00000486549 HOXC13P31276 330 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 TNFRSF4P43489 277 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 C1QBPQ07021 282 aaKnown RBP15.3■□□□□ 0.04
USP4-212ENST00000486549 EIF4EBP2Q13542 120 aaPredicted RBP15.3■□□□□ 0.04
USP4-212ENST00000486549 PIK3R6Q5UE93 754 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 ACAD10Q6JQN1 1059 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 DNAJC24Q6P3W2 148 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 SND1Q7KZF4 910 aaKnown RBP eCLIP15.3■□□□□ 0.04
USP4-212ENST00000486549 DNAAF5Q86Y56 855 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 LGI2Q8N0V4 545 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 HJURPQ8NCD3 748 aaPredicted RBP15.3■□□□□ 0.04
USP4-212ENST00000486549 JOSD2Q8TAC2 188 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 MYEOVQ96EZ4 313 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 BTN2A3PQ96KV6 586 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 PRICKLE1Q96MT3 831 aaPredicted RBP15.3■□□□□ 0.04
USP4-212ENST00000486549 SLC8A2Q9UPR5 921 aa15.3■□□□□ 0.04
USP4-212ENST00000486549 MYO18AQ92614 2054 aaKnown RBP15.29■□□□□ 0.04
USP4-212ENST00000486549 A0A0A0MRY4 1105 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 KCNU1A8MYU2 1149 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 PRRT4C9JH25 899 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 GFRA2O00451 464 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 KRT3P12035 628 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 TACR2P21452 398 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 SDC4P31431 198 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 GGCXP38435 758 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 ATXN1P54253 815 aaKnown RBP15.29■□□□□ 0.04
USP4-212ENST00000486549 RPS24P62847 133 aaKnown RBP15.29■□□□□ 0.04
USP4-212ENST00000486549 MRPS21P82921 87 aaKnown RBP15.29■□□□□ 0.04
USP4-212ENST00000486549 ATP11AP98196 1134 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 CDO1Q16878 200 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 SLC25A52Q3SY17 297 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 MS4A13Q5J8X5 152 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 SPECC1LQ69YQ0 1117 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 HEATR6Q6AI08 1181 aaKnown RBP15.29■□□□□ 0.04
USP4-212ENST00000486549 ANKS1BQ7Z6G8 1248 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 VSTM4Q8IW00 320 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 MCOLN2Q8IZK6 566 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 CFAP52Q8N1V2 620 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 GPR161Q8N6U8 529 aaKnown RBP15.29■□□□□ 0.04
USP4-212ENST00000486549 ZNF513Q8N8E2 541 aaPredicted RBP15.29■□□□□ 0.04
USP4-212ENST00000486549 TXNDC5Q8NBS9 432 aaKnown RBP15.29■□□□□ 0.04
USP4-212ENST00000486549 ZBTB44Q8NCP5 570 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 C3orf20Q8ND61 904 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 RXFP2Q8WXD0 754 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 RUBCNQ92622 972 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 NELL1Q92832 810 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 HHIPQ96QV1 700 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 HINFPQ9BQA5 517 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.29■□□□□ 0.04
USP4-212ENST00000486549 RBSNQ9H1K0 784 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 FBXO10Q9UK96 956 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 FANCMQ8IYD8 2048 aa15.29■□□□□ 0.04
USP4-212ENST00000486549 F5H5T6 163 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 K7ESF4 209 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 DDX3XO00571 662 aaKnown RBP eCLIP15.28■□□□□ 0.042e-8■■■■□ 21
USP4-212ENST00000486549 ATMINO43313 823 aaPredicted RBP15.28■□□□□ 0.04
USP4-212ENST00000486549 PAPSS2O95340 614 aaPredicted RBP15.28■□□□□ 0.04
USP4-212ENST00000486549 ADCY5O95622 1261 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 SERPING1P05155 500 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 PLEKP08567 350 aaPredicted RBP15.28■□□□□ 0.04
USP4-212ENST00000486549 TDGF1P13385 188 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 PDGFRAP16234 1089 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 RRM1P23921 792 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 WASP42768 502 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 KIR2DL1P43626 348 aaPredicted RBP15.28■□□□□ 0.04
USP4-212ENST00000486549 PXNP49023 591 aaPredicted RBP15.28■□□□□ 0.04
USP4-212ENST00000486549 GSCP56915 257 aaPredicted RBP15.28■□□□□ 0.04
USP4-212ENST00000486549 DMWDQ09019 674 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 TRIM14Q14142 442 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 DMC1Q14565 340 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 GEN1Q17RS7 908 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 C15orf59Q2T9L4 293 aaPredicted RBP15.28■□□□□ 0.04
USP4-212ENST00000486549 EGFLAMQ63HQ2 1017 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 HGSNATQ68CP4 663 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 PPP1R2P3Q6NXS1 205 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 SYT13Q7L8C5 426 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms