RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SULT1E1P49888 294 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 MS4A13Q5J8X5 152 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 ACBD5Q5T8D3 534 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-208ENST00000484246 NUDT18Q6ZVK8 323 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 ALYREFQ86V81 257 aaKnown RBP16.48■□□□□ 0.23
UPF3A-208ENST00000484246 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.48■□□□□ 0.23
UPF3A-208ENST00000484246 ATP6V0D2Q8N8Y2 350 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 HJURPQ8NCD3 748 aaPredicted RBP16.48■□□□□ 0.23
UPF3A-208ENST00000484246 ACDQ96AP0 544 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 TBCBQ99426 244 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 PRMT1Q99873 361 aaKnown RBP16.48■□□□□ 0.23
UPF3A-208ENST00000484246 ANP32EQ9BTT0 268 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 PIGVQ9NUD9 493 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 ARHGEF38Q9NXL2 777 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 TAS2R14Q9NYV8 317 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 SLC12A6Q9UHW9 1150 aa16.48■□□□□ 0.23
UPF3A-208ENST00000484246 MUC6Q6W4X9 2439 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 AP5Z1O43299 807 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 KRT3P12035 628 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 TFE3P19532 575 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-208ENST00000484246 RDXP35241 583 aaKnown RBP16.47■□□□□ 0.23
UPF3A-208ENST00000484246 RNASE9P60153 205 aaKnown RBP16.47■□□□□ 0.23
UPF3A-208ENST00000484246 KDSRQ06136 332 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 EIF4HQ15056 248 aaKnown RBP16.47■□□□□ 0.23
UPF3A-208ENST00000484246 TDRD12Q587J7 1177 aaKnown RBP16.47■□□□□ 0.23
UPF3A-208ENST00000484246 PLEKHA7Q6IQ23 1121 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 DNAJC24Q6P3W2 148 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 PKN3Q6P5Z2 889 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 SYT13Q7L8C5 426 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 STRADAQ7RTN6 431 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 VPS36Q86VN1 386 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 GAS2L3Q86XJ1 694 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 NAT16Q8N8M0 369 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 DDI1Q8WTU0 396 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 CENPIQ92674 756 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-208ENST00000484246 TMA16Q96EY4 203 aaKnown RBP16.47■□□□□ 0.23
UPF3A-208ENST00000484246 TRIM11Q96F44 468 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 FAM126AQ9BYI3 521 aaPredicted RBP16.47■□□□□ 0.23
UPF3A-208ENST00000484246 ISCUQ9H1K1 167 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 XPO7Q9UIA9 1087 aaKnown RBP16.47■□□□□ 0.23
UPF3A-208ENST00000484246 NENFQ9UMX5 172 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 KIAA1549LQ6ZVL6 1849 aa16.47■□□□□ 0.23
UPF3A-208ENST00000484246 MFAP3LO75121 409 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 RTN2O75298 545 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 MOCS2O96007 188 aaPredicted RBP16.46■□□□□ 0.23
UPF3A-208ENST00000484246 MYBL1P10243 752 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 SKILP12757 684 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 ABCB4P21439 1286 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 TACR2P21452 398 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 RRM1P23921 792 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 SDC4P31431 198 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 CXCL12P48061 93 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 SGSHP51688 502 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 SATB1Q01826 763 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 DEUP1Q05D60 604 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 TBX2Q13207 712 aaPredicted RBP16.46■□□□□ 0.23
UPF3A-208ENST00000484246 NME3Q13232 169 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 TTC39BQ5VTQ0 682 aaPredicted RBP16.46■□□□□ 0.23
UPF3A-208ENST00000484246 SND1Q7KZF4 910 aaKnown RBP eCLIP16.46■□□□□ 0.23
UPF3A-208ENST00000484246 ANKS1BQ7Z6G8 1248 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 KIAA0907Q7Z7F0 614 aaPredicted RBP16.46■□□□□ 0.23
UPF3A-208ENST00000484246 CHSY1Q86X52 802 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 SFTPA1Q8IWL2 248 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 EMC1Q8N766 993 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 OR8K1Q8NGG5 319 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 JOSD2Q8TAC2 188 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 CPLX3Q8WVH0 158 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 RXFP2Q8WXD0 754 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 CFAP57Q96MR6 1250 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 SELENOOQ9BVL4 669 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 PLK2Q9NYY3 685 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 ARHGAP20Q9P2F6 1191 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 MIA3Q5JRA6 1907 aa16.46■□□□□ 0.23
UPF3A-208ENST00000484246 GOLGA6L7A0A1B0GV03 622 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 SSU72P8A0A1W2PR75 194 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 TYW5A2RUC4 315 aaKnown RBP16.45■□□□□ 0.22
UPF3A-208ENST00000484246 TBC1D3BA6NDS4 549 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 K7ESF4 209 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 TRIM24O15164 1050 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 TPM1P09493 284 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 SP9P0CG40 484 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 PDGFRAP16234 1089 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 RFC1P35251 1148 aaPredicted RBP16.45■□□□□ 0.22
UPF3A-208ENST00000484246 E2F5Q15329 346 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 CCDC14Q49A88 953 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 C5orf22Q49AR2 442 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 C10orf76Q5T2E6 689 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 RFWD3Q6PCD5 774 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 WDR59Q6PJI9 974 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 TRMT11Q7Z4G4 463 aaKnown RBP16.45■□□□□ 0.22
UPF3A-208ENST00000484246 RPLP0P6Q8NHW5 317 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 WFIKKN2Q8TEU8 576 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 BHMTQ93088 406 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 MYEOVQ96EZ4 313 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 MRFAP1L1Q96HT8 127 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 LMLNQ96KR4 655 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 TRIM5Q9C035 493 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 ABHD10Q9NUJ1 306 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 PARVAQ9NVD7 372 aa16.45■□□□□ 0.22
UPF3A-208ENST00000484246 CLEC4EQ9ULY5 219 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms