RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 MLLT6P55198 1093 aaPredicted RBP12.67□□□□□ -0.38
SDC1-206ENST00000482879 GNG11P61952 73 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 SCAPQ12770 1279 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 HTR4Q13639 388 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 CA9Q16790 459 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 MS4A13Q5J8X5 152 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 ADGRF1Q5T601 910 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 PIK3R6Q5UE93 754 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 RAP1GAP2Q684P5 730 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 NADSYN1Q6IA69 706 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 VITQ6UXI7 678 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 POLNQ7Z5Q5 900 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 CHSY1Q86X52 802 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 PSTKQ8IV42 348 aaKnown RBP12.67□□□□□ -0.38
SDC1-206ENST00000482879 MFSD6LQ8IWD5 586 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 YAF2Q8IY57 180 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 PYROXD2Q8N2H3 581 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 KIAA1958Q8N8K9 716 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 UBE2Q2Q8WVN8 375 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 CD101Q93033 1021 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 C1orf74Q96LT6 269 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 DDX50Q9BQ39 737 aaKnown RBP12.67□□□□□ -0.38
SDC1-206ENST00000482879 RPP25Q9BUL9 199 aaKnown RBP12.67□□□□□ -0.38
SDC1-206ENST00000482879 OSBPL2Q9H1P3 480 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 LINC00597Q9H2U6 94 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 TBC1D14Q9P2M4 693 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 LIMD1Q9UGP4 676 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 PACSIN2Q9UNF0 486 aaPredicted RBP12.67□□□□□ -0.38
SDC1-206ENST00000482879 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.67□□□□□ -0.38
SDC1-206ENST00000482879 PCDHA3Q9Y5H8 950 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 HS3ST4Q9Y661 456 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 WNT6Q9Y6F9 365 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 NUMBLQ9Y6R0 609 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 EYSQ5T1H1 3165 aa12.67□□□□□ -0.38
SDC1-206ENST00000482879 KIF26AQ9ULI4 1882 aaPredicted RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 CCDC66A2RUB6 948 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 MIF4GDA9UHW6 222 aaKnown RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 TRDMT1O14717 391 aaKnown RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 PSMC3P17980 439 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 TACR2P21452 398 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 CTNNA1P35221 906 aaKnown RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 GGCXP38435 758 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 IFNAR2P48551 515 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 DNA2P51530 1060 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 AUHQ13825 339 aaKnown RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 GRM2Q14416 872 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 KRT81Q14533 505 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 RPS6KA1Q15418 735 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 ODF2Q5BJF6 829 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 FAM133BQ5BKY9 247 aaKnown RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 ACBD5Q5T8D3 534 aaPredicted RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 MEI1Q5TIA1 1274 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 RFWD3Q6PCD5 774 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 C14orf80Q86SX3 495 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 LGI2Q8N0V4 545 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 UBL4BQ8N7F7 174 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 KCTD6Q8NC69 237 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 DEPDC1BQ8WUY9 529 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 OSCP1Q8WVF1 389 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 RSAD2Q8WXG1 361 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 KRT35Q92764 455 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 OTUB2Q96DC9 234 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 KCTD15Q96SI1 283 aaPredicted RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 PRMT1Q99873 361 aaKnown RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.66□□□□□ -0.382e-6■■■□□ 16.2
SDC1-206ENST00000482879 KLHL11Q9NVR0 708 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 DUS2Q9NX74 493 aaKnown RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 DDX56Q9NY93 547 aaKnown RBP12.66□□□□□ -0.38
SDC1-206ENST00000482879 OR12D3Q9UGF7 316 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 STOML2Q9UJZ1 356 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 JRKLQ9Y4A0 524 aa12.66□□□□□ -0.38
SDC1-206ENST00000482879 F5H5T6 163 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 FAM72CH0Y354 149 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 DDX3YO15523 660 aaKnown RBP12.65□□□□□ -0.38
SDC1-206ENST00000482879 CREB3O43889 395 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 TSPAN3O60637 253 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 SRGAP2O75044 1071 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 KRT1P04264 644 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 SLC6A4P31645 630 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 L1CAMP32004 1257 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 CHKAP35790 457 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 MARCKSL1P49006 195 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 VCPP55072 806 aaKnown RBP12.65□□□□□ -0.38
SDC1-206ENST00000482879 CDH6P55285 790 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 RWDD2BP57060 319 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 NRG1Q02297 640 aaPredicted RBP12.65□□□□□ -0.38
SDC1-206ENST00000482879 DPYSL2Q16555 572 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 PPP6R3Q5H9R7 873 aaPredicted RBP12.65□□□□□ -0.38
SDC1-206ENST00000482879 FAM72AQ5TYM5 149 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 FAM72DQ6L9T8 149 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 FBXL22Q6P050 247 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 LRRC31Q6UY01 552 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 FAM72BQ86X60 149 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 ADHFE1Q8IWW8 467 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 FAM217AQ8IXS0 508 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 CPXM2Q8N436 756 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 ATXN2LQ8WWM7 1075 aaKnown RBP12.65□□□□□ -0.38
SDC1-206ENST00000482879 RAPGEF5Q92565 580 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 NXPE3Q969Y0 559 aa12.65□□□□□ -0.38
SDC1-206ENST00000482879 HES6Q96HZ4 224 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms