RNA–Protein interactions for RNA: ENST00000478169.5

CCM2-210, Transcript of CCM2 scaffold protein, human

TSL 4

Gene CCM2, Length 542 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCM2-210	ENST00000478169	PLXNA2	O75051	1894 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169		A0A087WV48	116 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	EIF4E1B	A6NMX2	242 aa	Known RBP	10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	PAPSS1	O43252	624 aa	Predicted RBP	10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	TSPAN3	O60637	253 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	SEMA4F	O95754	770 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	LATS1	O95835	1130 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	ZBED1	O96006	694 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	DNTT	P04053	509 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	TRIM49	P0CI25	452 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	TRIM49C	P0CI26	452 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	NR2F2	P24468	414 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	RPL13	P26373	211 aa	Known RBP	10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	HLA-F	P30511	346 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	GTF2H1	P32780	548 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	HARS2	P49590	506 aa	Known RBP	10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	CCT8	P50990	548 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	TKTL1	P51854	596 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	BCAT1	P54687	386 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	CYP4F3	Q08477	520 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	FNDC3B	Q53EP0	1204 aa	Known RBP	10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	ZNF394	Q53GI3	561 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	KRT39	Q6A163	491 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	CHST9	Q7L1S5	443 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	CACUL1	Q86Y37	369 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	AHI1	Q8N157	1196 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	SLC4A11	Q8NBS3	891 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	BIRC7	Q96CA5	298 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	TMA16	Q96EY4	203 aa	Known RBP	10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	TMEM176A	Q96HP8	235 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	LRIG1	Q96JA1	1093 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	ARID3A	Q99856	593 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	IRX2	Q9BZI1	471 aa	Predicted RBP	10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	SGK2	Q9HBY8	427 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	TMEM8A	Q9HCN3	771 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	CISH	Q9NSE2	258 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	SUN2	Q9UH99	717 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	HBS1L	Q9Y450	684 aa	Known RBP	10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	SLCO1B1	Q9Y6L6	691 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	CELSR3	Q9NYQ7	3312 aa		10.08	□□□□□ -0.8
CCM2-210	ENST00000478169	HELZ2	Q9BYK8	2649 aa	Known RBP	10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	GOLGA8CP	A6NN73	597 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	F13A1	P00488	732 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	ATP5B	P06576	529 aa	Known RBP	10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	DLD	P09622	509 aa	Known RBP	10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	ZSCAN22	P10073	491 aa	Predicted RBP	10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	CDK4	P11802	303 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	PSMC2	P35998	433 aa	Known RBP	10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	CTSK	P43235	329 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	RAD23B	P54727	409 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	RPS14	P62263	151 aa	Known RBP	10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	TTC31	Q49AM3	519 aa	Predicted RBP	10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	MPP7	Q5T2T1	576 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	ADGRF1	Q5T601	910 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	ZNF776	Q68DI1	518 aa	Predicted RBP	10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	USP30	Q70CQ3	517 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	ADIPOR2	Q86V24	386 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	TMPRSS12	Q86WS5	348 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	FMNL3	Q8IVF7	1028 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	FAM186B	Q8IYM0	893 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	RNF139	Q8WU17	664 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	CYB5D2	Q8WUJ1	264 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	BBC3	Q96PG8	261 aa	Predicted RBP	10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	PRSS16	Q9NQE7	514 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	GGA2	Q9UJY4	613 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	RCOR1	Q9UKL0	485 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	SCML1	Q9UN30	329 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	BPTF	Q12830	3046 aa		10.07	□□□□□ -0.8
CCM2-210	ENST00000478169	PTPRQ	Q9UMZ3	2332 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169		H0Y8X5	98 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	XPO1	O14980	1071 aa	Known RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	VILL	O15195	856 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	STX10	O60499	249 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	RHOBTB3	O94955	611 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	FSBP	O95073	299 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	C1S	P09871	688 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	PABPC1	P11940	636 aa	Known RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	POLR2E	P19388	210 aa	Known RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	RACK1	P63244	317 aa	Known RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	SFSWAP	Q12872	951 aa	Known RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	ADAM9	Q13443	819 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	FOXD4L5	Q5VV16	416 aa	Predicted RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	MBLAC2	Q68D91	279 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	KIAA0895L	Q68EN5	471 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	FOXD4L3	Q6VB84	417 aa	Predicted RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	BHLHA9	Q7RTU4	235 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	ADAT2	Q7Z6V5	191 aa	Known RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	SCML4	Q8N228	414 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	ZNF366	Q8N895	744 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	ZNF557	Q8N988	423 aa	Predicted RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	FBXL13	Q8NEE6	735 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	SEMA4D	Q92854	862 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	CCDC47	Q96A33	483 aa	Known RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	SKA1	Q96BD8	255 aa		10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	IPO9	Q96P70	1041 aa	Known RBP	10.06	□□□□□ -0.8
CCM2-210	ENST00000478169	ORAI3	Q9BRQ5	295 aa		10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms