RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 C9orf57Q5W0N0 161 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 C18orf25Q96B23 403 aaPredicted RBP15.01□□□□□ -0.01
HDAC6-220ENST00000477528 SHCBP1LQ9BZQ2 653 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 RBM22Q9NW64 420 aaKnown RBP eCLIP15.01□□□□□ -0.01
HDAC6-220ENST00000477528 CLUHO75153 1309 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 ACADSP16219 412 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 TRIP10Q15642 601 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 SEL1L3Q68CR1 1132 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 ULK4Q96C45 1275 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 ANKRD27Q96NW4 1050 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 KRT16P08779 473 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 KCNA4P22459 653 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 HARS2P49590 506 aaKnown RBP15.01□□□□□ -0.01
HDAC6-220ENST00000477528 CDK7P50613 346 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 ITGA9Q13797 1035 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 SCARA3Q6AZY7 606 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 FBXO32Q969P5 355 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 FAR2Q96K12 515 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 OLFM3Q96PB7 478 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 HAUS8Q9BT25 410 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 COLEC11Q9BWP8 271 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 TBC1D13Q9NVG8 400 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 TSPAN1O60635 241 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 EDF1O60869 148 aaKnown RBP15.01□□□□□ -0.01
HDAC6-220ENST00000477528 PYGLP06737 847 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 ATP4AP20648 1035 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 PSMB4P28070 264 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 RECQLP46063 649 aaPredicted RBP15.01□□□□□ -0.01
HDAC6-220ENST00000477528 GLRBP48167 497 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 TSTA3Q13630 321 aaPredicted RBP15.01□□□□□ -0.01
HDAC6-220ENST00000477528 RBBP7Q16576 425 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 LACTB2Q53H82 288 aaPredicted RBP15.01□□□□□ -0.01
HDAC6-220ENST00000477528 MIB1Q86YT6 1006 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 NIPA2Q8N8Q9 360 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 EGFL8Q99944 293 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 TKTL2Q9H0I9 626 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 SLCO1B3Q9NPD5 702 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 MORF4L1Q9UBU8 362 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 STYXL1Q9Y6J8 313 aa15.01□□□□□ -0.01
HDAC6-220ENST00000477528 COL16A1Q07092 1604 aaPredicted RBP15□□□□□ -0.01
HDAC6-220ENST00000477528 SMIM35A0A1B0GVV1 85 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 EDIL3O43854 480 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 MMP3P08254 477 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 GOT1P17174 413 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 TPH1P17752 444 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 HDAC4P56524 1084 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 LRRC36Q1X8D7 754 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 MRNIPQ6NTE8 343 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 CES3Q6UWW8 571 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 PSTKQ8IV42 348 aaKnown RBP15□□□□□ -0.01
HDAC6-220ENST00000477528 PDGFDQ9GZP0 370 aaPredicted RBP15□□□□□ -0.01
HDAC6-220ENST00000477528 A0A096LPK6 155 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 XPO1O14980 1071 aaKnown RBP15□□□□□ -0.01
HDAC6-220ENST00000477528 PIAS1O75925 651 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 CRYBB1P53674 252 aaPredicted RBP15□□□□□ -0.01
HDAC6-220ENST00000477528 PDPK2PQ6A1A2 396 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 PCYOX1LQ8NBM8 494 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 PBXIP1Q96AQ6 731 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 NXF3Q9H4D5 531 aaKnown RBP15□□□□□ -0.01
HDAC6-220ENST00000477528 ORC6Q9Y5N6 252 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 DAB1O75553 588 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 NUDT2P50583 147 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 POU5F1Q01860 360 aaKnown RBP15□□□□□ -0.01
HDAC6-220ENST00000477528 TRMT5Q32P41 509 aaKnown RBP15□□□□□ -0.01
HDAC6-220ENST00000477528 PRAMEF19Q5SWL8 479 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 STRADAQ7RTN6 431 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 TDRPQ86YL5 185 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 TOP6BLQ8N6T0 577 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 XPNPEP3Q9NQH7 507 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 CHST12Q9NRB3 414 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 TRIM13O60858 407 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 MLH1P40692 756 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 CNGA3Q16281 694 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 PDCD2Q16342 344 aaPredicted RBP15□□□□□ -0.01
HDAC6-220ENST00000477528 LARP7Q4G0J3 582 aaKnown RBP eCLIP15□□□□□ -0.01
HDAC6-220ENST00000477528 DDX1Q92499 740 aaKnown RBP15□□□□□ -0.01
HDAC6-220ENST00000477528 ZBTB10Q96DT7 871 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 NDFIP2Q9NV92 336 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 TUBGCP4Q9UGJ1 667 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 PCDHB7Q9Y5E2 793 aa15□□□□□ -0.01
HDAC6-220ENST00000477528 ZC3H4Q9UPT8 1303 aaKnown RBP14.99□□□□□ -0.01
HDAC6-220ENST00000477528 BTAF1O14981 1849 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 C22orf31O95567 290 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 DARSP14868 501 aaKnown RBP14.99□□□□□ -0.01
HDAC6-220ENST00000477528 KCNA3P22001 575 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 MAP2K5Q13163 448 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 POU6F1Q14863 301 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 TDRD5Q8NAT2 981 aaKnown RBP14.99□□□□□ -0.01
HDAC6-220ENST00000477528 ASIC4Q96FT7 647 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 PRDM12Q9H4Q4 367 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 A0A1B0GUL6 1792 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 AVILO75366 819 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 SKIV2L2P42285 1042 aaKnown RBP14.99□□□□□ -0.01
HDAC6-220ENST00000477528 MRPS5P82675 430 aaKnown RBP14.99□□□□□ -0.01
HDAC6-220ENST00000477528 EFEMP1Q12805 493 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 IMPG1Q17R60 797 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 CTXN3Q4LDR2 81 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 TMEM154Q6P9G4 183 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 ELMOD1Q8N336 334 aa14.99□□□□□ -0.01
HDAC6-220ENST00000477528 PLD5Q8N7P1 536 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms