RNA–Protein interactions for RNA: ENST00000474539.5

CCNL1-215, Transcript of cyclin L1, human

TSL 1 (best)

Gene CCNL1, Length 4,799 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-215	ENST00000474539	SNX30	Q5VWJ9	437 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	PLPP4	Q5VZY2	271 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SCIMP	Q6UWF3	145 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ABHD15	Q6UXT9	468 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	MIB1	Q86YT6	1006 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	LGI2	Q8N0V4	545 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ANKRD42	Q8N9B4	389 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	STK32A	Q8WU08	396 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	EMID1	Q96A84	441 aa	Predicted RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	STAMBPL1	Q96FJ0	436 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	BTN2A3P	Q96KV6	586 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	CSPG4P5	Q96PW8	444 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SIKE1	Q9BRV8	207 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	NSUN3	Q9H649	340 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	PTPN22	Q9Y2R2	807 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539		A0A1B0GTH6	734 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	GADD45B	O75293	160 aa	Predicted RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SYF2	O95926	243 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	GSTM1	P09488	218 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	RARG	P13631	454 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ZNF24	P17028	368 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	PSMA4	P25789	261 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	CASR	P41180	1078 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SKIV2L2	P42285	1042 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	CNTN2	Q02246	1040 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	GSTM4	Q03013	218 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	TLE2	Q04725	743 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	DNAJC3	Q13217	504 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	INPP5A	Q14642	412 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	TBC1D25	Q3MII6	688 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	TFDP3	Q5H9I0	405 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	RBM43	Q6ZSC3	357 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ANKS1B	Q7Z6G8	1248 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	LRRC6	Q86X45	466 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SLC35F6	Q8N357	371 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	KREMEN2	Q8NCW0	462 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	FOXJ1	Q92949	421 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	KIAA1143	Q96AT1	154 aa	Predicted RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	TRMT61B	Q9BVS5	477 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	VPS11	Q9H270	941 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	RUBCNL	Q9H714	662 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	DCDC2	Q9UHG0	476 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	AMACR	Q9UHK6	382 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	CORO1C	Q9ULV4	474 aa	Predicted RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ASTN2	O75129	1339 aa	Predicted RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	CAPN14	A8MX76	684 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	RASA4B	C9J798	803 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	GRAP2	O75791	330 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	PROSC	O94903	275 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SNRPA	P09012	282 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	CXCL8	P10145	99 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	MLN	P12872	115 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	HLA-DPA1	P20036	260 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ARSE	P51690	589 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	TAS2R50	P59544	299 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ESRRG	P62508	458 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	POU4F1	Q01851	419 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ILF3	Q12906	894 aa	Known RBP eCLIP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	MPP3	Q13368	585 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	BMT2	Q1RMZ1	405 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	CLEC16A	Q2KHT3	1053 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SPANXN3	Q5MJ09	141 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	TTI2	Q6NXR4	508 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ANGPTL8	Q6UXH0	198 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	LRIG3	Q6UXM1	1119 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	NT5DC3	Q86UY8	548 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	KBTBD6	Q86V97	674 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	CERS5	Q8N5B7	392 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	NKAP	Q8N5F7	415 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	CDC26	Q8NHZ8	85 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	PTCD2	Q8WV60	388 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	RERG	Q96A58	199 aa	Predicted RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	RNF25	Q96BH1	459 aa	Predicted RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SGSM3	Q96HU1	749 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	AIFM3	Q96NN9	605 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	CNPPD1	Q9BV87	410 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	BBS2	Q9BXC9	721 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	NMRAL1	Q9HBL8	299 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SAMSN1	Q9NSI8	373 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	ZC3H7B	Q9UGR2	993 aa	Known RBP	4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	PADI3	Q9ULW8	664 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	RGPD1	P0DJD0	1748 aa		4.74	□□□□□ -1.65
CCNL1-215	ENST00000474539	SPECC1L-ADORA2A	F8WAN1	911 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	KPNA3	O00505	521 aa	Predicted RBP	4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	FPGT	O14772	594 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	ZBTB14	O43829	449 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	GLRA3	O75311	464 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	SLITRK3	O94933	977 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	MYL2	P10916	166 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	CDC25A	P30304	524 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	HK2	P52789	917 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	C1QTNF8	P60827	252 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	TMPRSS15	P98073	1019 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	LAPTM5	Q13571	262 aa		4.73	□□□□□ -1.65
CCNL1-215	ENST00000474539	USP10	Q14694	798 aa	Known RBP	4.73	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms