RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PTPRNQ16849 979 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 ARHGAP44Q17R89 818 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 EXOC3L4Q17RC7 722 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 TRIM61Q5EBN2 209 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 MIIPQ5JXC2 388 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 MPP7Q5T2T1 576 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 N4BP2L1Q5TBK1 243 aaPredicted RBP19.31■□□□□ 0.68
COL7A1-209ENST00000474432 NUGGCQ68CJ6 796 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 SLC23A3Q6PIS1 610 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 TAC4Q86UU9 113 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 CREBRFQ8IUR6 639 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 UNC45BQ8IWX7 931 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 ADAM32Q8TC27 787 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 UCMAQ8WVF2 138 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 ZNF419Q96HQ0 510 aaPredicted RBP19.31■□□□□ 0.68
COL7A1-209ENST00000474432 IRX2Q9BZI1 471 aaPredicted RBP19.31■□□□□ 0.68
COL7A1-209ENST00000474432 CIPCQ9C0C6 399 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 TMEM245Q9H330 911 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 ITM2CQ9NQX7 267 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 ABCB8Q9NUT2 735 aa19.31■□□□□ 0.68
COL7A1-209ENST00000474432 CACNA1EQ15878 2313 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 KCNK5O95279 499 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 CD70P32970 193 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 NNTQ13423 1086 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 TAF5Q15542 800 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 KIAA1324Q6UXG2 1013 aaKnown RBP19.3■□□□□ 0.68
COL7A1-209ENST00000474432 CLEC17AQ6ZS10 378 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 THAP9Q9H5L6 903 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 PRDM16Q9HAZ2 1276 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 TMEM9BQ9NQ34 198 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 FSCN3Q9NQT6 498 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 XPO7Q9UIA9 1087 aaKnown RBP19.3■□□□□ 0.68
COL7A1-209ENST00000474432 TLR6Q9Y2C9 796 aa19.3■□□□□ 0.68
COL7A1-209ENST00000474432 EPG5Q9HCE0 2579 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 MED7O43513 233 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 TBL1XO60907 577 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 PABPC1P11940 636 aaKnown RBP19.29■□□□□ 0.68
COL7A1-209ENST00000474432 HLA-EP13747 358 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 HOXD12P35452 270 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 SLC11A2P49281 568 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 PDCLQ13371 301 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 CAMK2GQ13555 558 aaPredicted RBP19.29■□□□□ 0.68
COL7A1-209ENST00000474432 STARD3Q14849 445 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 NUMA1Q14980 2115 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 CHST9Q7L1S5 443 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 TMPRSS6Q8IU80 811 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 WFIKKN2Q8TEU8 576 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 CYB5D2Q8WUJ1 264 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 GOLGA1Q92805 767 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 FAM149B1Q96BN6 582 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 FAM81BQ96LP2 452 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 SERPINB11Q96P15 392 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 CPXM1Q96SM3 734 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 CAPN10Q9HC96 672 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 WSB2Q9NYS7 404 aaPredicted RBP19.29■□□□□ 0.68
COL7A1-209ENST00000474432 GGA2Q9UJY4 613 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 INTS6Q9UL03 887 aaKnown RBP19.29■□□□□ 0.68
COL7A1-209ENST00000474432 PCDHGC3Q9UN70 934 aa19.29■□□□□ 0.68
COL7A1-209ENST00000474432 FOXN3O00409 490 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-209ENST00000474432 GIPC1O14908 333 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 ZBTB24O43167 697 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-209ENST00000474432 IRAK2O43187 625 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 SART1O43290 800 aaKnown RBP19.28■□□□□ 0.68
COL7A1-209ENST00000474432 IGLV3-19P01714 112 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 PNMA6AP0CW24 399 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-209ENST00000474432 ENGP17813 658 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 ERCC5P28715 1186 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-209ENST00000474432 CLCN1P35523 988 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 MTIF2P46199 727 aaKnown RBP19.28■□□□□ 0.68
COL7A1-209ENST00000474432 RPS24P62847 133 aaKnown RBP19.28■□□□□ 0.68
COL7A1-209ENST00000474432 KCNMA1Q12791 1236 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 MAN2A1Q16706 1144 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 MBLAC2Q68D91 279 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 SERPINA13PQ6UXR4 307 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 MYO19Q96H55 970 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 HSPA12BQ96MM6 686 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 CNTNAP3BQ96NU0 1288 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 CNTNAP3Q9BZ76 1288 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 NUCKS1Q9H1E3 243 aaKnown RBP19.28■□□□□ 0.68
COL7A1-209ENST00000474432 DNAJC12Q9UKB3 198 aa19.28■□□□□ 0.68
COL7A1-209ENST00000474432 PCNX2A6NKB5 2137 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 EPHX1P07099 455 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 PMLP29590 882 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 CD6P30203 668 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 USP8P40818 1118 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 DPP6P42658 865 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 TPMTP51580 245 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 YWHAZP63104 245 aaKnown RBP19.27■□□□□ 0.68
COL7A1-209ENST00000474432 DUOXA1Q1HG43 343 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 FSCBQ5H9T9 825 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 MS4A13Q5J8X5 152 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 SMYD5Q6GMV2 418 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 AHI1Q8N157 1196 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 ZNF366Q8N895 744 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 FIBINQ8TAL6 211 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 TOE1Q96GM8 510 aaKnown RBP19.27■□□□□ 0.68
COL7A1-209ENST00000474432 NDST4Q9H3R1 872 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 POPDC2Q9HBU9 364 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 LMBRD1Q9NUN5 540 aa19.27■□□□□ 0.68
COL7A1-209ENST00000474432 SLC6A14Q9UN76 642 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms