RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 KYQ8NBH2 561 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 RNF217Q8TC41 542 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 TFB1MQ8WVM0 346 aaKnown RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 PRR11Q96HE9 360 aaPredicted RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 CNDP1Q96KN2 507 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 MECRQ9BV79 373 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 HAPLN2Q9GZV7 340 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 CDH19Q9H159 772 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 C12orf65Q9H3J6 166 aaKnown RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 PCDH18Q9HCL0 1135 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 COPG2Q9UBF2 871 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 TNFSF13BQ9Y275 285 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 HEY1Q9Y5J3 304 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 A0A0A0MRY4 1105 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 MAGEB16A2A368 324 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 RGSL1A5PLK6 1076 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 ERI2A8K979 691 aaKnown RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 E5RJQ4 531 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 MTSS1O43312 755 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 CD48P09326 243 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 FAM58BPP0C7Q3 252 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 FGF3P11487 239 aaPredicted RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 GPD2P43304 727 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 ACADSBP45954 432 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 POLD2P49005 469 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 IDH3AP50213 366 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 CSE1LP55060 971 aaKnown RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 WNT7BP56706 349 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 BACE1P56817 501 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 RBP5P82980 135 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 SLC25A3Q00325 362 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 ILF2Q12905 390 aaKnown RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 BMPR2Q13873 1038 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 UBAP2LQ14157 1087 aaKnown RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 MDH1BQ5I0G3 518 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 FAM182BQ5T319 152 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 DPY19L2Q6NUT2 758 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 SCYL2Q6P3W7 929 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 RFX8Q6ZV50 586 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 TAB3Q8N5C8 712 aaPredicted RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 EMC1Q8N766 993 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 ATG4CQ96DT6 458 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 SPATA13Q96N96 652 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 NT5C1AQ9BXI3 368 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 NFKBIZQ9BYH8 718 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 GLIS2Q9BZE0 524 aaPredicted RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 ILKAPQ9H0C8 392 aaPredicted RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 XPNPEP3Q9NQH7 507 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 YDJCA8MPS7 323 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 PIK3R2O00459 728 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 PSMD3O43242 534 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 RNASEH1O60930 286 aaKnown RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 PHKA2P46019 1235 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 INHBEP58166 350 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 SLC6A3Q01959 620 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 NIPAL4Q0D2K0 466 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 INCA1Q0VD86 236 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 MTMR2Q13614 643 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 CCNIQ14094 377 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 RFTN1Q14699 578 aaPredicted RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 DPYSL2Q16555 572 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 UNC5BQ8IZJ1 945 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 GABPB2Q8TAK5 448 aaPredicted RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 PRPF31Q8WWY3 499 aaKnown RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 PYDC1Q8WXC3 89 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 ISL2Q96A47 359 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 FAR2Q96K12 515 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 BRD8Q9H0E9 1235 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 LRRC40Q9H9A6 602 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 NGRNQ9NPE2 291 aaKnown RBP6.29□□□□□ -1.4
HERC4-209ENST00000473533 C8orf4Q9NR00 106 aa6.29□□□□□ -1.4
HERC4-209ENST00000473533 C2orf71A6NGG8 1288 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 CCDC160A6NGH7 325 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 CXorf49A8MYA2 514 aaPredicted RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 PLSCR1O15162 318 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 TRIM13O60858 407 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ASLP04424 464 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ITGA2BP08514 1039 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ITGAXP20702 1163 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 CYP2F1P24903 491 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 SERPINB5P36952 375 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 RPL10AP62906 217 aaKnown RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 KLF10Q13118 480 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 PRKAA1Q13131 559 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 TUBB3Q13509 450 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 FLOT2Q14254 428 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 PDK1Q15118 436 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ZBTB41Q5SVQ8 909 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 NPNTQ6UXI9 565 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 TRIM50Q86XT4 487 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 PGAM4Q8N0Y7 254 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 TERB1Q8NA31 727 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ZNF280CQ8ND82 737 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 AKT1S1Q96B36 256 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 DCUN1D1Q96GG9 259 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 CLPTM1LQ96KA5 538 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 TRIM56Q9BRZ2 755 aaKnown RBP6.28□□□□□ -1.4
HERC4-209ENST00000473533 EFCAB1Q9HAE3 211 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 TCF7L2Q9NQB0 619 aa6.28□□□□□ -1.4
HERC4-209ENST00000473533 ADAMTS5Q9UNA0 930 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms