RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-209ENST00000472044 C9orf78Q9NZ63 289 aaPredicted RBP4.33□□□□□ -1.72
PTCD3-209ENST00000472044 ARPP21Q9UBL0 812 aaPredicted RBP4.33□□□□□ -1.72
PTCD3-209ENST00000472044 KCND3Q9UK17 655 aa4.33□□□□□ -1.72
PTCD3-209ENST00000472044 ING1Q9UK53 422 aaPredicted RBP4.33□□□□□ -1.72
PTCD3-209ENST00000472044 BAG5Q9UL15 447 aa4.33□□□□□ -1.72
PTCD3-209ENST00000472044 RAB21Q9UL25 225 aa4.33□□□□□ -1.72
PTCD3-209ENST00000472044 TRPC5Q9UL62 973 aaPredicted RBP4.33□□□□□ -1.72
PTCD3-209ENST00000472044 VPS4AQ9UN37 437 aa4.33□□□□□ -1.72
PTCD3-209ENST00000472044 SLC12A4Q9UP95 1085 aa4.33□□□□□ -1.72
PTCD3-209ENST00000472044 LZTS1Q9Y250 596 aa4.33□□□□□ -1.72
PTCD3-209ENST00000472044 DERAQ9Y315 318 aa4.33□□□□□ -1.72
PTCD3-209ENST00000472044 SPATA31A5Q5VU36 1347 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 SPATA31A6Q5VVP1 1343 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 SPATA31A7Q8IWB4 1347 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 SAC3D1A6NKF1 404 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 SEPT4O43236 478 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 HNRNPRO43390 633 aaKnown RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 C1QL1O75973 258 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 HEXIM1O94992 359 aaKnown RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 FSHBP01225 129 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 CHRM5P08912 532 aaPredicted RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 CNPP09543 421 aaKnown RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 PAX3P23760 479 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 GRK5P34947 590 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 HOXD12P35452 270 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 MAPK9P45984 424 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 CLK3P49761 638 aaKnown RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 TGFB2P61812 414 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 WDR5P61964 334 aaKnown RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 GAB1Q13480 694 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 TAF12Q16514 161 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 AKNAD1Q5T1N1 836 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 TMEM88Q6PEY1 159 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 LVRNQ6Q4G3 990 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 VSTM1Q6UX27 236 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 DCDC5Q6ZRR9 648 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 BBS12Q6ZW61 710 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 SYT13Q7L8C5 426 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 LRRTM4Q86VH4 590 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 PTGR2Q8N8N7 351 aaPredicted RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 USP38Q8NB14 1042 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 SLC16A11Q8NCK7 471 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 SRFBP1Q8NEF9 429 aaKnown RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 ASB12Q8WXK4 309 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 AKAP1Q92667 903 aaKnown RBP eCLIP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 GOLGA1Q92805 767 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 KTI12Q96EK9 354 aaPredicted RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 ZNF845Q96IR2 970 aaPredicted RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 HS6ST2Q96MM7 605 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 PIGSQ96S52 555 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 AGAP2Q99490 1192 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 NOD2Q9HC29 1040 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 RIC8AQ9NPQ8 531 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 ASB6Q9NWX5 421 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 PI4KBQ9UBF8 816 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 SERGEFQ9UGK8 458 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 PCDHA10Q9Y5I2 948 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 SIRT4Q9Y6E7 314 aaPredicted RBP4.32□□□□□ -1.72
PTCD3-209ENST00000472044 WNT6Q9Y6F9 365 aa4.32□□□□□ -1.72
PTCD3-209ENST00000472044 AOX1Q06278 1338 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 WDR33Q9C0J8 1336 aaKnown RBP4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3DA0A087WVF3 549 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3IA0A087WXS9 549 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3EA0A087X179 549 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3KA0A087X1G2 549 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 A0A1B0GVC2 190 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3BA6NDS4 549 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3FA6NER0 549 aaPredicted RBP4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3LB9A6J9 549 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 UBE2Q2LH0YL09 131 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 PRYO14603 147 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 ALDOAP04075 364 aaKnown RBP4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3HP0C7X1 549 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 CHN1P15882 459 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 NDUFS1P28331 727 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 SLC8A1P32418 973 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 PCP4P48539 62 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 AGTR2P50052 363 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 ZNF84P51523 738 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 RBM5P52756 815 aaKnown RBP eCLIP4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TAS2R50P59544 299 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TLE2Q04725 743 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 KCNB1Q14721 858 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 CNGA3Q16281 694 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 CTXN3Q4LDR2 81 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 MAP3K21Q5TCX8 1036 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3GQ6DHY5 549 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 SUMO4Q6EEV6 95 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3CQ6IPX1 549 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TMEM65Q6PI78 240 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 SLC39A5Q6ZMH5 540 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 CPOQ8IVL8 374 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TBC1D3Q8IZP1 549 aaPredicted RBP4.31□□□□□ -1.72
PTCD3-209ENST00000472044 ADPRHL1Q8NDY3 354 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 ZNF398Q8TD17 642 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 CHFRQ96EP1 664 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 COG8Q96MW5 612 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 TWNKQ96RR1 684 aa4.31□□□□□ -1.72
PTCD3-209ENST00000472044 GATA5Q9BWX5 397 aaPredicted RBP4.31□□□□□ -1.72
PTCD3-209ENST00000472044 IKZF4Q9H2S9 585 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms