RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 BRMS1LQ5PSV4 323 aa15.33■□□□□ 0.04
COL9A3-209ENST00000469852 RAP1GAP2Q684P5 730 aa15.33■□□□□ 0.04
COL9A3-209ENST00000469852 CC2D1AQ6P1N0 951 aaPredicted RBP15.33■□□□□ 0.04
COL9A3-209ENST00000469852 SND1Q7KZF4 910 aaKnown RBP eCLIP15.33■□□□□ 0.041e-31■■□□□ 13.7
COL9A3-209ENST00000469852 C14orf80Q86SX3 495 aa15.33■□□□□ 0.04
COL9A3-209ENST00000469852 TMEM25Q86YD3 366 aa15.33■□□□□ 0.04
COL9A3-209ENST00000469852 CHFRQ96EP1 664 aa15.33■□□□□ 0.04
COL9A3-209ENST00000469852 BTN2A3PQ96KV6 586 aa15.33■□□□□ 0.04
COL9A3-209ENST00000469852 PRICKLE1Q96MT3 831 aaPredicted RBP15.33■□□□□ 0.04
COL9A3-209ENST00000469852 PRMT1Q99873 361 aaKnown RBP15.33■□□□□ 0.04
COL9A3-209ENST00000469852 BRD9Q9H8M2 597 aa15.33■□□□□ 0.04
COL9A3-209ENST00000469852 GPATCH2LQ9NWQ4 482 aa15.33■□□□□ 0.04
COL9A3-209ENST00000469852 THG1LQ9NWX6 298 aaKnown RBP15.33■□□□□ 0.04
COL9A3-209ENST00000469852 HS3ST4Q9Y661 456 aa15.33■□□□□ 0.04
COL9A3-209ENST00000469852 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.33■□□□□ 0.04
COL9A3-209ENST00000469852 MACROD2A1Z1Q3 448 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 MOCS3O95396 460 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 LATS1O95835 1130 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 SLC2A3P11169 496 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 ADRA1BP35368 520 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 SOX9P48436 509 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 IRAK1P51617 712 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 SLC25A11Q02978 314 aaKnown RBP15.32■□□□□ 0.04
COL9A3-209ENST00000469852 KIF5AQ12840 1032 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 CA9Q16790 459 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 GAB4Q2WGN9 574 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 LY6G5CQ5SRR4 150 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 NAIF1Q69YI7 327 aaPredicted RBP15.32■□□□□ 0.04
COL9A3-209ENST00000469852 RHBDF2Q6PJF5 856 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 TPGS1Q6ZTW0 290 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 PYROXD2Q8N2H3 581 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 KIAA1958Q8N8K9 716 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 ATP6V0D2Q8N8Y2 350 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 TPCN2Q8NHX9 752 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 AZIN2Q96A70 460 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 SIK2Q9H0K1 926 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 TBC1D14Q9P2M4 693 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 FZD10Q9ULW2 581 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 DUSP12Q9UNI6 340 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 SORCS3Q9UPU3 1222 aa15.32■□□□□ 0.04
COL9A3-209ENST00000469852 FAM72CH0Y354 149 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 RNF8O76064 485 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 SRFP11831 508 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 TACR2P21452 398 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 PCK1P35558 622 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 SLC11A2P49281 568 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 RUNX3Q13761 415 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 ACAP1Q15027 740 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 PDGFRLQ15198 375 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 DHCR24Q15392 516 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 SMTNL2Q2TAL5 461 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 ADGRF1Q5T601 910 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 FAM72AQ5TYM5 149 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 FAM72DQ6L9T8 149 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 CHSY1Q86X52 802 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 FAM72BQ86X60 149 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 ZNF683Q8IZ20 524 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 CPXM2Q8N436 756 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 BHMTQ93088 406 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 NTAN1Q96AB6 310 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 OTUB2Q96DC9 234 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 SNRNP25Q9BV90 132 aaKnown RBP15.31■□□□□ 0.04
COL9A3-209ENST00000469852 ECT2Q9H8V3 914 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 LZTFL1Q9NQ48 299 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 SPHK2Q9NRA0 654 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 PLK2Q9NYY3 685 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 USP18Q9UMW8 372 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 GUCA1BQ9UMX6 200 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 ZNF510Q9Y2H8 683 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 HCN4Q9Y3Q4 1203 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 CAPN6Q9Y6Q1 641 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 MIA3Q5JRA6 1907 aa15.31■□□□□ 0.04
COL9A3-209ENST00000469852 GRID2IPA4D2P6 1211 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 USP27XA6NNY8 438 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 SLC9A3R1O14745 358 aaPredicted RBP15.3■□□□□ 0.04
COL9A3-209ENST00000469852 COMTP21964 271 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 MAN1A1P33908 653 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 GJC1P36383 396 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 MLLT6P55198 1093 aaPredicted RBP15.3■□□□□ 0.04
COL9A3-209ENST00000469852 SCAPQ12770 1279 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 AUHQ13825 339 aaKnown RBP15.3■□□□□ 0.04
COL9A3-209ENST00000469852 ATP13A4Q4VNC1 1196 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 KCNT1Q5JUK3 1230 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 FYB2Q5VWT5 728 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 FBXL22Q6P050 247 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 SLFN11Q7Z7L1 901 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 C12orf40Q86WS4 652 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 CIR1Q86X95 450 aaPredicted RBP15.3■□□□□ 0.04
COL9A3-209ENST00000469852 REXO1L1PQ8IX06 675 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 LGI2Q8N0V4 545 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 CFAP52Q8N1V2 620 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 LRRC57Q8N9N7 239 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 IRF7Q92985 503 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 ATP2A3Q93084 1043 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 IGSF8Q969P0 613 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 ZWILCHQ9H900 591 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 SLC2A4RGQ9NR83 387 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 HEBP1Q9NRV9 189 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 SLC12A6Q9UHW9 1150 aa15.3■□□□□ 0.04
COL9A3-209ENST00000469852 CLEC4EQ9ULY5 219 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms