RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 ARID3BQ8IVW6 561 aaPredicted RBP19.68■□□□□ 0.74
VIM-203ENST00000469543 MCUQ8NE86 351 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 SLC7A14Q8TBB6 771 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 GTF3C2Q8WUA4 911 aaPredicted RBP19.68■□□□□ 0.74
VIM-203ENST00000469543 ARNTL2Q8WYA1 636 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 EDEM1Q92611 657 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 GAD1Q99259 594 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 DCAF8L1A6NGE4 600 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 CELF2O95319 508 aaKnown RBP19.68■□□□□ 0.74
VIM-203ENST00000469543 USP17L7P0C7H9 530 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 NPR3P17342 541 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 ABCG1P45844 678 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 CLCNKBP51801 687 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 APBB1IPQ7Z5R6 666 aaPredicted RBP19.68■□□□□ 0.74
VIM-203ENST00000469543 LRRC4Q9HBW1 653 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 KRT82Q9NSB4 513 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 DDX43Q9NXZ2 648 aaKnown RBP19.68■□□□□ 0.74
VIM-203ENST00000469543 MOCS1Q9NZB8 636 aa19.68■□□□□ 0.74
VIM-203ENST00000469543 A0A0A0MRY4 1105 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 FAM159BA6NKW6 160 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 XPO1O14980 1071 aaKnown RBP19.67■□□□□ 0.74
VIM-203ENST00000469543 ERVK-10P10266 1014 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 NR2C2P49116 596 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 PGGT1BP53609 377 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 SNX16P57768 344 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 WASHC5Q12768 1159 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 SEMA5AQ13591 1074 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 EFHC1Q5JVL4 640 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 ZNF567Q8N184 647 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 FBXO27Q8NI29 283 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 WNT8BQ93098 351 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 HSFY1Q96LI6 401 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 SPATA13Q96N96 652 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 NMUR2Q9GZQ4 415 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 FAM124BQ9H5Z6 455 aaPredicted RBP19.67■□□□□ 0.74
VIM-203ENST00000469543 MCM8Q9UJA3 840 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 EIF4E1BA6NMX2 242 aaKnown RBP19.67■□□□□ 0.74
VIM-203ENST00000469543 TRDMT1O14717 391 aaKnown RBP19.67■□□□□ 0.74
VIM-203ENST00000469543 KCNE1P15382 129 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 ATG14Q6ZNE5 492 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 STRADAQ7RTN6 431 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 TNIP3Q96KP6 325 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 ZNF560Q96MR9 790 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 PARK7Q99497 189 aaKnown RBP19.67■□□□□ 0.74
VIM-203ENST00000469543 HNRNPABQ99729 332 aaKnown RBP19.67■□□□□ 0.74
VIM-203ENST00000469543 ULBP1Q9BZM6 244 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 DENND2DQ9H6A0 471 aaPredicted RBP19.67■□□□□ 0.74
VIM-203ENST00000469543 PCDHA11Q9Y5I1 949 aa19.67■□□□□ 0.74
VIM-203ENST00000469543 ALDOAP04075 364 aaKnown RBP19.66■□□□□ 0.74
VIM-203ENST00000469543 RFX8Q6ZV50 586 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 PID1Q7Z2X4 250 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 CHSY1Q86X52 802 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 PGBD4Q96DM1 585 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 NPY6RQ99463 290 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 NCAPGQ9BPX3 1015 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 APOL2Q9BQE5 337 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 ZNF358Q9NW07 568 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 SYBUQ9NX95 663 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 CCDC78A2IDD5 438 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 LYPLA1O75608 230 aaPredicted RBP19.66■□□□□ 0.74
VIM-203ENST00000469543 KCNA4P22459 653 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 DEUP1Q05D60 604 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 SV2CQ496J9 727 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 XKR4Q5GH76 650 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 DSTYKQ6XUX3 929 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 CCDC91Q7Z6B0 441 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 NUDCD3Q8IVD9 361 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 SIX6OS1Q8N1H7 587 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 AZIN2Q96A70 460 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 PCED1BQ96HM7 432 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 CADM1Q9BY67 442 aaKnown RBP19.66■□□□□ 0.74
VIM-203ENST00000469543 UBP1Q9NZI7 540 aa19.66■□□□□ 0.74
VIM-203ENST00000469543 CASTOR2A6NHX0 329 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 CAPN9O14815 690 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 KRT38O76015 456 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 MYCNP04198 464 aaPredicted RBP19.65■□□□□ 0.74
VIM-203ENST00000469543 HASPINQ8TF76 798 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 E2F7Q96AV8 911 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 TSPYL2Q9H2G4 693 aaPredicted RBP19.65■□□□□ 0.74
VIM-203ENST00000469543 EBF2Q9HAK2 575 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 GTF2IRD1Q9UHL9 959 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 ZNF180Q9UJW8 692 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 TPSB2P20231 275 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 ACADSBP45954 432 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 TPSAB1Q15661 275 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 RINLQ6ZS11 566 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 LIMS2Q7Z4I7 341 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 HACE1Q8IYU2 909 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 NPWQ8N729 165 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 ZMIZ2Q8NF64 920 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 OR52K1Q8NGK4 314 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 SENP8Q96LD8 212 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 SMOQ99835 787 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 EBF4Q9BQW3 602 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 SLC45A1Q9Y2W3 748 aa19.65■□□□□ 0.74
VIM-203ENST00000469543 TTC3P53804 2025 aa19.64■□□□□ 0.74
VIM-203ENST00000469543 GSRP00390 522 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 NCAM1P13591 858 aa19.64■□□□□ 0.73
VIM-203ENST00000469543 ZFXP17010 805 aaPredicted RBP19.64■□□□□ 0.73
VIM-203ENST00000469543 CCND1P24385 295 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms