RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 GLI1P08151 1106 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 C7P10643 843 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 POLR2EP19388 210 aaKnown RBP7.57□□□□□ -1.2
PTPRF-210ENST00000463041 ITPKAP23677 461 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 HLA-FP30511 346 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 USP8P40818 1118 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 IL12RB1P42701 662 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 BPIFB4P59827 614 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 YWHAZP63104 245 aaKnown RBP7.57□□□□□ -1.2
PTPRF-210ENST00000463041 MAN2A1Q16706 1144 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 ARHGAP44Q17R89 818 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 TRIM61Q5EBN2 209 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 SYCP2LQ5T4T6 812 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 PEAR1Q5VY43 1037 aaPredicted RBP7.57□□□□□ -1.2
PTPRF-210ENST00000463041 TMEM215Q68D42 235 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 TCEAL6Q6IPX3 200 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 TMPRSS6Q8IU80 811 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 CCDC117Q8IWD4 279 aaPredicted RBP7.57□□□□□ -1.2
PTPRF-210ENST00000463041 AHI1Q8N157 1196 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 WDTC1Q8N5D0 677 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.57□□□□□ -1.2
PTPRF-210ENST00000463041 CADM4Q8NFZ8 388 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 FIBINQ8TAL6 211 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 CLEC4CQ8WTT0 213 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 SHC3Q92529 594 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 FOXJ1Q92949 421 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 TCEAL3Q969E4 200 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 FAM149B1Q96BN6 582 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 SIPA1Q96FS4 1042 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 SLC39A13Q96H72 371 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 NUP58Q9BVL2 599 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 CIPCQ9C0C6 399 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 NDST4Q9H3R1 872 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 POPDC2Q9HBU9 364 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 TMEM74BQ9NUR3 256 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.57□□□□□ -1.2
PTPRF-210ENST00000463041 WSB2Q9NYS7 404 aaPredicted RBP7.57□□□□□ -1.2
PTPRF-210ENST00000463041 SLC12A6Q9UHW9 1150 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 PCDHGC3Q9UN70 934 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 SLC6A14Q9UN76 642 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 CYP8B1Q9UNU6 501 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 NAALADL1Q9UQQ1 740 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 RAD54BQ9Y620 910 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 KNTC1P50748 2209 aa7.57□□□□□ -1.2
PTPRF-210ENST00000463041 CHD8Q9HCK8 2581 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 GOLGA6L7A0A1B0GV03 622 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 TYW5A2RUC4 315 aaKnown RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 PATE3B3GLJ2 98 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 E5RJQ4 531 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 FOXN3O00409 490 aaPredicted RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 PAPSS1O43252 624 aaPredicted RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 TBL1XO60907 577 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 KCNK5O95279 499 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 IGLV3-19P01714 112 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 EPHX1P07099 455 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 SYPP08247 313 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 SERPINF2P08697 491 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 DLDP09622 509 aaKnown RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 SLC2A3P11169 496 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 ACADMP11310 421 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 PABPC1P11940 636 aaKnown RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 CD6P30203 668 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 KRT9P35527 623 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 CDK17Q00537 523 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 MTA1Q13330 715 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 EIF4EBP2Q13542 120 aaPredicted RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 CAMK2GQ13555 558 aaPredicted RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 VWA3BQ502W6 1294 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 FAM133BQ5BKY9 247 aaKnown RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 EFHC1Q5JVL4 640 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 WDR45BQ5MNZ6 344 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 N4BP2L1Q5TBK1 243 aaPredicted RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 SYPL2Q5VXT5 272 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 MBLAC2Q68D91 279 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 RFWD3Q6PCD5 774 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 GJB7Q6PEY0 223 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 KIAA1324Q6UXG2 1013 aaKnown RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 SERPINA13PQ6UXR4 307 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 CHST9Q7L1S5 443 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 ADIPOR2Q86V24 386 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 DEFB119Q8N690 84 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 OR2T3Q8NH03 318 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 DQX1Q8TE96 717 aaKnown RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 SORCS1Q8WY21 1168 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 DNASE2BQ8WZ79 361 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 PRCCQ92733 491 aaPredicted RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 TTC17Q96AE7 1141 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 PPP1R13BQ96KQ4 1090 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 BTN2A3PQ96KV6 586 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 FCRL2Q96LA5 508 aaPredicted RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 NOX5Q96PH1 765 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 TUBGCP2Q9BSJ2 902 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 MKRN2Q9H000 416 aaKnown RBP7.56□□□□□ -1.2
PTPRF-210ENST00000463041 NUP62CLQ9H1M0 184 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 TMEM245Q9H330 911 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 FBRSQ9HAH7 460 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 ABCB8Q9NUT2 735 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 TMEM51Q9NW97 253 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 ASNSD1Q9NWL6 643 aa7.56□□□□□ -1.2
PTPRF-210ENST00000463041 USP36Q9P275 1121 aaKnown RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms