RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	GOLPH3L	Q9H4A5	285 aa		11.66	□□□□□ -0.54
PTPN7-204	ENST00000462815	MMRN2	Q9H8L6	949 aa		11.66	□□□□□ -0.54
PTPN7-204	ENST00000462815	RAB20	Q9NX57	234 aa		11.66	□□□□□ -0.54
PTPN7-204	ENST00000462815	APOBEC2	Q9Y235	224 aa	Known RBP	11.66	□□□□□ -0.54
PTPN7-204	ENST00000462815	COQ4	Q9Y3A0	265 aa		11.66	□□□□□ -0.54
PTPN7-204	ENST00000462815	PCDHB9	Q9Y5E1	797 aa		11.66	□□□□□ -0.54
PTPN7-204	ENST00000462815	SNX11	Q9Y5W9	270 aa		11.66	□□□□□ -0.54
PTPN7-204	ENST00000462815	PLXNA2	O75051	1894 aa		11.66	□□□□□ -0.54
PTPN7-204	ENST00000462815	COL5A1	P20908	1838 aa	Predicted RBP	11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	YJEFN3	A6XGL0	299 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815		E7ENQ6	273 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	FLRT2	O43155	660 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	PAPSS1	O43252	624 aa	Predicted RBP	11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	TIMM44	O43615	452 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	TSPAN3	O60637	253 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	LATS1	O95835	1130 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	CYBB	P04839	570 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	IGHV4-34	P06331	123 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	KRT13	P13646	458 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	TRIM21	P19474	475 aa	Known RBP	11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	MXI1	P50539	228 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	RPS14	P62263	151 aa	Known RBP	11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	ADAM9	Q13443	819 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	GOLGA7B	Q2TAP0	167 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	COL28A1	Q2UY09	1125 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	EDRF1	Q3B7T1	1238 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	MPPE1	Q53F39	396 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	FAM133B	Q5BKY9	247 aa	Known RBP	11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	LAYN	Q6UX15	382 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	PDZD3	Q86UT5	571 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	FAM124A	Q86V42	546 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	SCML4	Q8N228	414 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	TTC39C	Q8N584	583 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	CYB5D2	Q8WUJ1	264 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	BIRC7	Q96CA5	298 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	MYEOV	Q96EZ4	313 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	EEF2KMT	Q96G04	330 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	BBC3	Q96PG8	261 aa	Predicted RBP	11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	LHX5	Q9H2C1	402 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	CCDC86	Q9H6F5	360 aa	Known RBP	11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	TM9SF3	Q9HD45	589 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	PRSS16	Q9NQE7	514 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	SFMBT1	Q9UHJ3	866 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	TSPAN16	Q9UKR8	245 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	STRIP2	Q9ULQ0	834 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	HBS1L	Q9Y450	684 aa	Known RBP	11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815	ATM	Q13315	3056 aa		11.65	□□□□□ -0.54
PTPN7-204	ENST00000462815		O00370	1275 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	MSI1	O43347	362 aa	Known RBP	11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	ACADM	P11310	421 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	SLC6A4	P31645	630 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	CD70	P32970	193 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	CTSK	P43235	329 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	SYK	P43405	635 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	GRIA4	P48058	902 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	AFF3	P51826	1226 aa	Known RBP	11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	BCAT1	P54687	386 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	ADIG	Q0VDE8	80 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	SMAD1	Q15797	465 aa	Known RBP	11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	ADGRF1	Q5T601	910 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	BSPRY	Q5W0U4	402 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	MSANTD2	Q6P1R3	559 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	KRBA2	Q6ZNG9	492 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	CHST9	Q7L1S5	443 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	RSRC2	Q7L4I2	434 aa	Known RBP	11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	SMYD4	Q8IYR2	804 aa	Predicted RBP	11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	WFIKKN2	Q8TEU8	576 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	SETD7	Q8WTS6	366 aa	Known RBP	11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	KCTD13	Q8WZ19	329 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	EDEM1	Q92611	657 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	PRICKLE1	Q96MT3	831 aa	Predicted RBP	11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	ZSWIM1	Q9BR11	485 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	SCUBE2	Q9NQ36	999 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	OLA1	Q9NTK5	396 aa	Known RBP	11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	ABCB8	Q9NUT2	735 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	GGA2	Q9UJY4	613 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	ANKRD6	Q9Y2G4	727 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	RAX	Q9Y2V3	346 aa		11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	TP53BP1	Q12888	1972 aa	Predicted RBP	11.64	□□□□□ -0.55
PTPN7-204	ENST00000462815	NYNRIN	Q9P2P1	1898 aa	Known RBP	11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	SETX	Q7Z333	2677 aa	Known RBP	11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	GOLGA4	Q13439	2230 aa	Known RBP	11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815		H0Y8X5	98 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	PCDHGA12	O60330	932 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	SEMA4F	O95754	770 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	DLD	P09622	509 aa	Known RBP	11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	PABPC1	P11940	636 aa	Known RBP	11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	RPL13	P26373	211 aa	Known RBP	11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	DAOA	P59103	153 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	ZNF445	P59923	1031 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	ZBTB16	Q05516	673 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	BST2	Q10589	180 aa	Known RBP	11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	CUL2	Q13617	745 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	E2F5	Q15329	346 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	MPP7	Q5T2T1	576 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	PIK3R6	Q5UE93	754 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	MBLAC2	Q68D91	279 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	NADSYN1	Q6IA69	706 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	AHI1	Q8N157	1196 aa		11.63	□□□□□ -0.55
PTPN7-204	ENST00000462815	TFAP2B	Q92481	460 aa		11.63	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms