RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 PI15O43692 258 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 NARSO43776 548 aaKnown RBP7.89□□□□□ -1.15
USP54-208ENST00000461520 MAFKO60675 156 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 TOM1L1O75674 476 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 ITGB3P05106 788 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 RPL9P32969 192 aaKnown RBP7.89□□□□□ -1.15
USP54-208ENST00000461520 ID4P47928 161 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 OSTNP61366 133 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 STRN3Q13033 797 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 HTR4Q13639 388 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 ZRSR1Q15695 479 aaKnown RBP7.89□□□□□ -1.15
USP54-208ENST00000461520 SLC8B1Q6J4K2 584 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 GRASPQ7Z6J2 395 aaPredicted RBP7.89□□□□□ -1.15
USP54-208ENST00000461520 CCDC105Q8IYK2 499 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 ADSSL1Q8N142 457 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 ZNF461Q8TAF7 563 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 SLC7A14Q8TBB6 771 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 RSAD2Q8WXG1 361 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 CDK5RAP3Q96JB5 506 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 AK8Q96MA6 479 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 RBM15Q96T37 977 aaKnown RBP eCLIP7.89□□□□□ -1.15
USP54-208ENST00000461520 SLC2A4RGQ9NR83 387 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 LARSQ9P2J5 1176 aaKnown RBP7.89□□□□□ -1.15
USP54-208ENST00000461520 CDH7Q9ULB5 785 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 CDY1Q9Y6F8 540 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 NUMBLQ9Y6R0 609 aa7.89□□□□□ -1.15
USP54-208ENST00000461520 EP300Q09472 2414 aaPredicted RBP7.89□□□□□ -1.15
USP54-208ENST00000461520 ZNF292O60281 2723 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 MTCL1Q9Y4B5 1905 aaKnown RBP7.88□□□□□ -1.15
USP54-208ENST00000461520 WDR87Q6ZQQ6 2873 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 TRAV20A0A0B4J274 112 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 PODXLO00592 558 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 SYN3O14994 580 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 CCL16O15467 120 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 STK10O94804 968 aaKnown RBP7.88□□□□□ -1.15
USP54-208ENST00000461520 PLA2G4BP0C869 781 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 SCP2P22307 547 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 GRK2P25098 689 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 TKTP29401 623 aaKnown RBP7.88□□□□□ -1.15
USP54-208ENST00000461520 GRK3P35626 688 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 BRCC3P46736 316 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 SLC12A3P55017 1021 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 MCL1Q07820 350 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 IFRD2Q12894 506 aaPredicted RBP7.88□□□□□ -1.15
USP54-208ENST00000461520 NOLC1Q14978 699 aaKnown RBP eCLIP7.88□□□□□ -1.15
USP54-208ENST00000461520 TMEM119Q4V9L6 283 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 PHF19Q5T6S3 580 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 DBX2Q6ZNG2 339 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 MTSS1LQ765P7 747 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 SPATC1Q76KD6 591 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 FAM124AQ86V42 546 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 LGI4Q8N135 537 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 TMEM161BQ8NDZ6 487 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 FGF13Q92913 245 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 LCORQ96JN0 433 aaPredicted RBP7.88□□□□□ -1.15
USP54-208ENST00000461520 ZBTB45Q96K62 511 aaPredicted RBP7.88□□□□□ -1.15
USP54-208ENST00000461520 ZMAT2Q96NC0 199 aaKnown RBP7.88□□□□□ -1.15
USP54-208ENST00000461520 L2HGDHQ9H9P8 463 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 DNMT3BQ9UBC3 853 aaKnown RBP7.88□□□□□ -1.15
USP54-208ENST00000461520 ODF2LQ9ULJ1 636 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 SMC3Q9UQE7 1217 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 ZSCAN21Q9Y5A6 473 aaPredicted RBP7.88□□□□□ -1.15
USP54-208ENST00000461520 NUB1Q9Y5A7 615 aa7.88□□□□□ -1.15
USP54-208ENST00000461520 DNAH14Q0VDD8 3507 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 ARHGEF37A1IGU5 675 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 H7C4K7 107 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 I3L4J1 428 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 CLDN3O15551 220 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 TBC1D4O60343 1298 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 ABLIM3O94929 683 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 BMP15O95972 392 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 PLATP00750 562 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 LTFP02788 710 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 CYP1A1P04798 512 aaPredicted RBP7.87□□□□□ -1.15
USP54-208ENST00000461520 HARSP12081 509 aaKnown RBP7.87□□□□□ -1.15
USP54-208ENST00000461520 ELF1P32519 619 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 UBA7P41226 1012 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 NTHL1P78549 312 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 ROR1Q01973 937 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 ANGPT1Q15389 498 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 PABPC1LQ4VXU2 614 aaKnown RBP7.87□□□□□ -1.15
USP54-208ENST00000461520 BORAQ6PGQ7 559 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 PARM1Q6UWI2 310 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 BRAPQ7Z569 592 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 PROSER1Q86XN7 944 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 TRIM48Q8IWZ4 208 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 ITFG1Q8TB96 612 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 FGF14Q92915 247 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 CALML4Q96GE6 196 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 TMEM209Q96SK2 561 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 PLIN2Q99541 437 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 PLEKHA5Q9HAU0 1116 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 ARHGEF3Q9NR81 526 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 ANKFY1Q9P2R3 1169 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 CNOT11Q9UKZ1 510 aaKnown RBP7.87□□□□□ -1.15
USP54-208ENST00000461520 CA14Q9ULX7 337 aa7.87□□□□□ -1.15
USP54-208ENST00000461520 TTC26A0AVF1 554 aa7.86□□□□□ -1.15
USP54-208ENST00000461520 WDR27A2RRH5 827 aa7.86□□□□□ -1.15
USP54-208ENST00000461520 RHOP08100 348 aa7.86□□□□□ -1.15
USP54-208ENST00000461520 CLTAP09496 248 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms