RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ASNSD1Q9NWL6 643 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 DNAJC12Q9UKB3 198 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 NAALADL1Q9UQQ1 740 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 CEP295Q9C0D2 2601 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 NUMA1Q14980 2115 aa12.52□□□□□ -0.41
USP40-210ENST00000454354 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 IGHV1OR15-9A0A0B4J2B8 117 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 FOXN3O00409 490 aaPredicted RBP12.51□□□□□ -0.41
USP40-210ENST00000454354 AP5Z1O43299 807 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 GLI1P08151 1106 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 C7P10643 843 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 HOXD12P35452 270 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 DHPSP49366 369 aaPredicted RBP12.51□□□□□ -0.41
USP40-210ENST00000454354 YWHAZP63104 245 aaKnown RBP12.51□□□□□ -0.41
USP40-210ENST00000454354 KCNMA1Q12791 1236 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 FUT11Q495W5 492 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 HSP90AA4PQ58FG1 418 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 TCP11X2Q5H9J9 407 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 KLHDC7AQ5VTJ3 777 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 CDKAL1Q5VV42 579 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 SYPL2Q5VXT5 272 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 TCEAL6Q6IPX3 200 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 RFWD3Q6PCD5 774 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 ADIPOR2Q86V24 386 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 TMEFF1Q8IYR6 380 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 AHI1Q8N157 1196 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 ZNF557Q8N988 423 aaPredicted RBP12.51□□□□□ -0.41
USP40-210ENST00000454354 HJURPQ8NCD3 748 aaPredicted RBP12.51□□□□□ -0.41
USP40-210ENST00000454354 ENOX1Q8TC92 643 aaKnown RBP12.51□□□□□ -0.41
USP40-210ENST00000454354 WFDC5Q8TCV5 224 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 TCEAL3Q969E4 200 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 PPP1R13BQ96KQ4 1090 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 PRICKLE1Q96MT3 831 aaPredicted RBP12.51□□□□□ -0.41
USP40-210ENST00000454354 SLC2A13Q96QE2 648 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 DDX50Q9BQ39 737 aaKnown RBP12.51□□□□□ -0.41
USP40-210ENST00000454354 NAA15Q9BXJ9 866 aaKnown RBP12.51□□□□□ -0.41
USP40-210ENST00000454354 CIPCQ9C0C6 399 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 TJP2Q9UDY2 1190 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 EVLQ9UI08 416 aaPredicted RBP12.51□□□□□ -0.41
USP40-210ENST00000454354 GGA2Q9UJY4 613 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 NFE2L3Q9Y4A8 694 aa12.51□□□□□ -0.41
USP40-210ENST00000454354 GOLGA6L7A0A1B0GV03 622 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 LNP1A1A4G5 178 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 DCDC2BA2VCK2 349 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 CAPN9O14815 690 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 TM4SF5O14894 197 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 ZBTB24O43167 697 aaPredicted RBP12.5□□□□□ -0.41
USP40-210ENST00000454354 MAP3K13O43283 966 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 TBL1XO60907 577 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 HSF2BPO75031 334 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 TRUB2O95900 331 aaKnown RBP12.5□□□□□ -0.41
USP40-210ENST00000454354 PNMA6AP0CW24 399 aaPredicted RBP12.5□□□□□ -0.41
USP40-210ENST00000454354 PABPC1P11940 636 aaKnown RBP12.5□□□□□ -0.41
USP40-210ENST00000454354 PRKCHP24723 683 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 PTGER3P43115 390 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 BPIFB4P59827 614 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 STPG1Q5TH74 334 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 LYSMD4Q5XG99 296 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 OLFML1Q6UWY5 402 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 SLC47A2Q86VL8 602 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 C1orf131Q8NDD1 294 aaKnown RBP12.5□□□□□ -0.41
USP40-210ENST00000454354 ADAM32Q8TC27 787 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 SORCS1Q8WY21 1168 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 DDX1Q92499 740 aaKnown RBP12.5□□□□□ -0.41
USP40-210ENST00000454354 LMLNQ96KR4 655 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 NOX5Q96PH1 765 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 EDEM2Q9BV94 578 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 SLC6A17Q9H1V8 727 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 TMEM245Q9H330 911 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 ABCB8Q9NUT2 735 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 USP36Q9P275 1121 aaKnown RBP12.5□□□□□ -0.41
USP40-210ENST00000454354 FHOD1Q9Y613 1164 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 TPRP12270 2363 aaKnown RBP12.5□□□□□ -0.41
USP40-210ENST00000454354 ACACBO00763 2458 aa12.5□□□□□ -0.41
USP40-210ENST00000454354 TYW5A2RUC4 315 aaKnown RBP12.49□□□□□ -0.41
USP40-210ENST00000454354 KHNYNO15037 678 aaKnown RBP12.49□□□□□ -0.41
USP40-210ENST00000454354 IGLV3-19P01714 112 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 APOEP02649 317 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 UCHL3P15374 230 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 CD70P32970 193 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 CDH5P33151 784 aaPredicted RBP12.49□□□□□ -0.41
USP40-210ENST00000454354 KRT9P35527 623 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 COPAP53621 1224 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 SNX16P57768 344 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 PITX1P78337 314 aaPredicted RBP12.49□□□□□ -0.41
USP40-210ENST00000454354 RPL6Q02878 288 aaKnown RBP12.49□□□□□ -0.41
USP40-210ENST00000454354 DRAP1Q14919 205 aaPredicted RBP12.49□□□□□ -0.41
USP40-210ENST00000454354 TAF5Q15542 800 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 PTPRNQ16849 979 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 PTPN20Q4JDL3 420 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 MS4A13Q5J8X5 152 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 EFHC1Q5JVL4 640 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 IL31Q6EBC2 164 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 FAM183BPQ6ZVS7 135 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 CHST9Q7L1S5 443 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 ARMCX6Q7L4S7 300 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 SLC26A9Q7LBE3 791 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 SYT12Q8IV01 421 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 PASD1Q8IV76 773 aa12.49□□□□□ -0.41
USP40-210ENST00000454354 MFN1Q8IWA4 741 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms