RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 AKAP1Q92667 903 aaKnown RBP eCLIP4.55□□□□□ -1.68
USP40-209ENST00000452724 PAGR1Q9BTK6 254 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 SORBS1Q9BX66 1292 aaKnown RBP4.55□□□□□ -1.68
USP40-209ENST00000452724 PABPC3Q9H361 631 aaKnown RBP4.55□□□□□ -1.68
USP40-209ENST00000452724 CCDC134Q9H6E4 229 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 MLXIPQ9HAP2 919 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 SEMA5BQ9P283 1151 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 DAPP1Q9UN19 280 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 ZBTB1Q9Y2K1 713 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 RIPOR2Q9Y4F9 1068 aa4.55□□□□□ -1.68
USP40-209ENST00000452724 ZNF521Q96K83 1311 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 TTC34A8MYJ7 566 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 M0QYT0 321 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 IPO5O00410 1097 aaKnown RBP4.54□□□□□ -1.68
USP40-209ENST00000452724 NKX2-8O15522 239 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 LARGE1O95461 756 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 IGKV2-30P06310 120 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 NDUFS1P28331 727 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 SF3A3Q12874 501 aaKnown RBP eCLIP4.54□□□□□ -1.68
USP40-209ENST00000452724 KLF9Q13886 244 aaPredicted RBP4.54□□□□□ -1.68
USP40-209ENST00000452724 PRKG1Q13976 671 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 ZNF569Q5MCW4 686 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 JMJD6Q6NYC1 403 aaPredicted RBP4.54□□□□□ -1.68
USP40-209ENST00000452724 MIS18BP1Q6P0N0 1132 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 NFRKBQ6P4R8 1299 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 KYAT3Q6YP21 454 aaKnown RBP4.54□□□□□ -1.68
USP40-209ENST00000452724 RAB11FIP2Q7L804 512 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 C16orf71Q8IYS4 520 aaPredicted RBP4.54□□□□□ -1.68
USP40-209ENST00000452724 GALNT16Q8N428 558 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 NKAPQ8N5F7 415 aaKnown RBP4.54□□□□□ -1.68
USP40-209ENST00000452724 SCAMP5Q8TAC9 235 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 PNISRQ8TF01 805 aaKnown RBP4.54□□□□□ -1.68
USP40-209ENST00000452724 HMGB4Q8WW32 186 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 REXO5Q96IC2 774 aaKnown RBP4.54□□□□□ -1.68
USP40-209ENST00000452724 TMEM120AQ9BXJ8 343 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 QTRT1Q9BXR0 403 aaKnown RBP4.54□□□□□ -1.68
USP40-209ENST00000452724 BRD8Q9H0E9 1235 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 MYLK2Q9H1R3 596 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 VPS16Q9H269 839 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 MAFFQ9ULX9 164 aa4.54□□□□□ -1.68
USP40-209ENST00000452724 MORC2Q9Y6X9 1032 aaPredicted RBP4.54□□□□□ -1.68
USP40-209ENST00000452724 KRTAP29-1A8MX34 341 aaPredicted RBP4.53□□□□□ -1.68
USP40-209ENST00000452724 PRYO14603 147 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 IKBKBO14920 756 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 TP73O15350 636 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 MOSPD3O75425 235 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 EIF3JO75822 258 aaKnown RBP4.53□□□□□ -1.68
USP40-209ENST00000452724 RNF8O76064 485 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 SLC8A1P32418 973 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 HALP42357 657 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 VPS41P49754 854 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 AGTR2P50052 363 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 GAB1Q13480 694 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 KPNB1Q14974 876 aaKnown RBP4.53□□□□□ -1.68
USP40-209ENST00000452724 PFKFB3Q16875 520 aaPredicted RBP4.53□□□□□ -1.68
USP40-209ENST00000452724 TIGD6Q17RP2 521 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 PXDC1Q5TGL8 231 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 WDR93Q6P2C0 686 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 BHLHA9Q7RTU4 235 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 CNGA4Q8IV77 575 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 C8orf58Q8NAV2 365 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 SPATA5Q8NB90 893 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 C5orf34Q96MH7 638 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 SH2D3AQ9BRG2 576 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 HERPUD2Q9BSE4 406 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 EFHD1Q9BUP0 239 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 MECRQ9BV79 373 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 ELOVL1Q9BW60 279 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 PRSS22Q9GZN4 317 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 NUAK2Q9H093 628 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 ARL8BQ9NVJ2 186 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 ASNSD1Q9NWL6 643 aa4.53□□□□□ -1.68
USP40-209ENST00000452724 TUBA8Q9NY65 449 aaPredicted RBP4.53□□□□□ -1.68
USP40-209ENST00000452724 C19orf53Q9UNZ5 99 aaPredicted RBP4.53□□□□□ -1.68
USP40-209ENST00000452724 HEMK1Q9Y5R4 338 aaPredicted RBP4.53□□□□□ -1.68
USP40-209ENST00000452724 SIRT4Q9Y6E7 314 aaPredicted RBP4.53□□□□□ -1.68
USP40-209ENST00000452724 HMX3A6NHT5 357 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 SLC38A8A6NNN8 435 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 EFCAB8A8MWE9 144 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 PIP5K1CO60331 668 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 HOXD12P35452 270 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 CDK7P50613 346 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 CCT4P50991 539 aaKnown RBP4.52□□□□□ -1.69
USP40-209ENST00000452724 FAM3BP58499 235 aaPredicted RBP4.52□□□□□ -1.69
USP40-209ENST00000452724 RPL15P61313 204 aaKnown RBP4.52□□□□□ -1.69
USP40-209ENST00000452724 TLE3Q04726 772 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 DHX8Q14562 1220 aaKnown RBP4.52□□□□□ -1.69
USP40-209ENST00000452724 POSTNQ15063 836 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 RPS6KA2Q15349 733 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 SEC23BQ15437 767 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 SUPT20HL1Q3ZLR7 823 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 TTC22Q5TAA0 569 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 ZNF813Q6ZN06 617 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 LAS2Q8IYD9 372 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 GALNT15Q8N3T1 639 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 ANKRD42Q8N9B4 389 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 ZNF398Q8TD17 642 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 RUBCNQ92622 972 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 C3orf49Q96BT1 292 aa4.52□□□□□ -1.69
USP40-209ENST00000452724 TRMT61AQ96FX7 289 aaKnown RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms