RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 VCX3BQ9H321 246 aa19.65■□□□□ 0.74
SDCBP-204ENST00000447182 SMARCAD1Q9H4L7 1026 aa19.65■□□□□ 0.74
SDCBP-204ENST00000447182 EIF2B3Q9NR50 452 aaKnown RBP19.65■□□□□ 0.74
SDCBP-204ENST00000447182 MTMR10Q9NXD2 777 aa19.65■□□□□ 0.74
SDCBP-204ENST00000447182 DPP3Q9NY33 737 aa19.65■□□□□ 0.74
SDCBP-204ENST00000447182 A0A0A0MRY4 1105 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 ARHGAP42A6NI28 874 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 HACD1B0YJ81 288 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 PRKCGP05129 697 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 KCNA4P22459 653 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 IDH3AP50213 366 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 RAB27AP51159 221 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 INHBEP58166 350 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 UNC5BQ8IZJ1 945 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 CCDC33Q8N5R6 958 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 SPATA13Q96N96 652 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 TRIM4Q9C037 500 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 SPATC1LQ9H0A9 340 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 DHX35Q9H5Z1 703 aaKnown RBP19.64■□□□□ 0.74
SDCBP-204ENST00000447182 DTLQ9NZJ0 730 aa19.64■□□□□ 0.74
SDCBP-204ENST00000447182 TRIP11Q15643 1979 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 SOCS7O14512 581 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 ZNF195O14628 629 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 GABBR2O75899 941 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 DGKIO75912 1065 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 C22orf31O95567 290 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 PROCP04070 461 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 HARS2P49590 506 aaKnown RBP19.64■□□□□ 0.73
SDCBP-204ENST00000447182 ERFP50548 548 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 HTR3CQ8WXA8 447 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 CMTM5Q96DZ9 223 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 SPATA33Q96N06 139 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 OLFM3Q96PB7 478 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 CSPG4P5Q96PW8 444 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 DDX50Q9BQ39 737 aaKnown RBP19.64■□□□□ 0.73
SDCBP-204ENST00000447182 NAT9Q9BTE0 207 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 PIM2Q9P1W9 311 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 TBC1D30Q9Y2I9 924 aa19.64■□□□□ 0.73
SDCBP-204ENST00000447182 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.63■□□□□ 0.73
SDCBP-204ENST00000447182 ITGA2BP08514 1039 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 ZCCHC18P0CG32 403 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 PGAM1P18669 254 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 TFE3P19532 575 aaPredicted RBP19.63■□□□□ 0.73
SDCBP-204ENST00000447182 CDK7P50613 346 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 PRKG1Q13976 671 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 CCNIQ14094 377 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 RALGPS1Q5JS13 557 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 TREML2Q5T2D2 321 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 NCBP2-AS2Q69YL0 99 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 RNF111Q6ZNA4 994 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 DENND5BQ6ZUT9 1274 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.63■□□□□ 0.73
SDCBP-204ENST00000447182 SHKBP1Q8TBC3 707 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 TFB1MQ8WVM0 346 aaKnown RBP19.63■□□□□ 0.73
SDCBP-204ENST00000447182 ARNTL2Q8WYA1 636 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 MPHOSPH6Q99547 160 aaKnown RBP19.63■□□□□ 0.73
SDCBP-204ENST00000447182 PDGFDQ9GZP0 370 aaPredicted RBP19.63■□□□□ 0.73
SDCBP-204ENST00000447182 COPG2Q9UBF2 871 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 CDH22Q9UJ99 828 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 AP4E1Q9UPM8 1137 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 ANKRD33BA6NCL7 494 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 POLE2P56282 527 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 ASPHQ12797 758 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 ATG14Q6ZNE5 492 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 C10orf107Q8IVU9 208 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 POU5F2Q8N7G0 328 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 PYDC1Q8WXC3 89 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 KCTD15Q96SI1 283 aaPredicted RBP19.63■□□□□ 0.73
SDCBP-204ENST00000447182 EBF3Q9H4W6 596 aa19.63■□□□□ 0.73
SDCBP-204ENST00000447182 RNASEH1O60930 286 aaKnown RBP19.62■□□□□ 0.73
SDCBP-204ENST00000447182 VAV1P15498 845 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 PRDX6P30041 224 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 SCNN1AP37088 669 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 ABCE1P61221 599 aaKnown RBP19.62■□□□□ 0.73
SDCBP-204ENST00000447182 RPL26P61254 145 aaKnown RBP19.62■□□□□ 0.73
SDCBP-204ENST00000447182 DEUP1Q05D60 604 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 PDPK2PQ6A1A2 396 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 CASC4Q6P4E1 433 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 SLC26A9Q7LBE3 791 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 RASSF3Q86WH2 238 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 NCSTNQ92542 709 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 PNPOQ9NVS9 261 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 CPSF2Q9P2I0 782 aaKnown RBP19.62■□□□□ 0.73
SDCBP-204ENST00000447182 SLC17A6Q9P2U8 582 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 USP3Q9Y6I4 520 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 PTPRFP10586 1907 aa19.62■□□□□ 0.73
SDCBP-204ENST00000447182 CITO14578 2027 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 ARF4P18085 180 aaPredicted RBP19.61■□□□□ 0.73
SDCBP-204ENST00000447182 CPB2Q96IY4 423 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 CLMNQ96JQ2 1002 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 B3GNT5Q9BYG0 378 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 KLHL4Q9C0H6 718 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 PRDM16Q9HAZ2 1276 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 PSAT1Q9Y617 370 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 A0A087WZ62 844 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 NFKBIEO00221 500 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 ARRB2P32121 409 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 LIN52Q52LA3 116 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 ACOT1Q86TX2 421 aa19.61■□□□□ 0.73
SDCBP-204ENST00000447182 COLGALT1Q8NBJ5 622 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms