RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 LEFTY2O00292 366 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 ACSL4O60488 711 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 TCF3P15923 654 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 CDKN2BP42772 138 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 PYROXD2Q8N2H3 581 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 RASGEF1CQ8N431 466 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 ZSCAN18Q8TBC5 510 aaPredicted RBP21.42■■□□□ 1.02
CHD3-204ENST00000439235 SH3RF2Q8TEC5 729 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 FGF13Q92913 245 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 NAP1L3Q99457 506 aaPredicted RBP21.42■■□□□ 1.02
CHD3-204ENST00000439235 SIK2Q9H0K1 926 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 MTMR10Q9NXD2 777 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 CFAP97Q9P2B7 532 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 OR12D3Q9UGF7 316 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 CDH22Q9UJ99 828 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 CDH7Q9ULB5 785 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 EFR3BQ9Y2G0 817 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 ZNF510Q9Y2H8 683 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 HS3ST4Q9Y661 456 aa21.42■■□□□ 1.02
CHD3-204ENST00000439235 DENND4CQ5VZ89 1909 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 hCG_1818297A0A087WSY0 165 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 PGRMC1O00264 195 aaKnown RBP21.41■■□□□ 1.02
CHD3-204ENST00000439235 EEF2KO00418 725 aaKnown RBP21.41■■□□□ 1.02
CHD3-204ENST00000439235 ZNF185O15231 689 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 CREB3O43889 395 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 CD48P09326 243 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 PAFAH1B1P43034 410 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 MLLT6P55198 1093 aaPredicted RBP21.41■■□□□ 1.02
CHD3-204ENST00000439235 TPI1P60174 286 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 CKAP4Q07065 602 aaKnown RBP21.41■■□□□ 1.02
CHD3-204ENST00000439235 USP4Q13107 963 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 SEMA3BQ13214 749 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 SKIV2LQ15477 1246 aaKnown RBP21.41■■□□□ 1.02
CHD3-204ENST00000439235 TAZQ16635 292 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 WHAMMP3Q1A5X7 153 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 MS4A13Q5J8X5 152 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 CHSY1Q86X52 802 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 DENND1CQ8IV53 801 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 ACTRT1Q8TDG2 376 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 ADAMTS19Q8TE59 1207 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 TSC1Q92574 1164 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 USP13Q92995 863 aaPredicted RBP21.41■■□□□ 1.02
CHD3-204ENST00000439235 MAK16Q9BXY0 300 aaKnown RBP21.41■■□□□ 1.02
CHD3-204ENST00000439235 OSBPL8Q9BZF1 889 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 RRAGDQ9NQL2 400 aaPredicted RBP21.41■■□□□ 1.02
CHD3-204ENST00000439235 XPO7Q9UIA9 1087 aaKnown RBP21.41■■□□□ 1.02
CHD3-204ENST00000439235 TTC7AQ9ULT0 858 aaPredicted RBP21.41■■□□□ 1.02
CHD3-204ENST00000439235 MRFAP1Q9Y605 127 aa21.41■■□□□ 1.02
CHD3-204ENST00000439235 NOTCH4Q99466 2003 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 C2orf16Q68DN1 1984 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 E2F8A0AVK6 867 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 PRAMEF12O95522 483 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 HCAR3P49019 387 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 CBX2Q14781 532 aaPredicted RBP21.4■■□□□ 1.02
CHD3-204ENST00000439235 CCDC85BQ15834 202 aaPredicted RBP21.4■■□□□ 1.02
CHD3-204ENST00000439235 PIK3R6Q5UE93 754 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 AADACL2Q6P093 401 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 LRRC31Q6UY01 552 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 Q6ZNB5 142 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 HTR3DQ70Z44 454 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 RFX6Q8HWS3 928 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 CREG2Q8IUH2 290 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 ARID3BQ8IVW6 561 aaPredicted RBP21.4■■□□□ 1.02
CHD3-204ENST00000439235 CELF5Q8N6W0 485 aaKnown RBP21.4■■□□□ 1.02
CHD3-204ENST00000439235 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.4■■□□□ 1.02
CHD3-204ENST00000439235 MAIP1Q8WWC4 291 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 FAF2Q96CS3 445 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 TBC1D31Q96DN5 1066 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 CAPZA3Q96KX2 299 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 ZSWIM3Q96MP5 696 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 CSPG4P5Q96PW8 444 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 SMG9Q9H0W8 520 aaKnown RBP21.4■■□□□ 1.02
CHD3-204ENST00000439235 UBE2ZQ9H832 354 aaPredicted RBP21.4■■□□□ 1.02
CHD3-204ENST00000439235 PRDM16Q9HAZ2 1276 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 AGO1Q9UL18 857 aaKnown RBP21.4■■□□□ 1.02
CHD3-204ENST00000439235 TRANK1O15050 2925 aa21.4■■□□□ 1.02
CHD3-204ENST00000439235 PRRC2BQ5JSZ5 2229 aaKnown RBP21.4■■□□□ 1.02
CHD3-204ENST00000439235 F5H5T6 163 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 DAPK3O43293 454 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 TJP3O95049 919 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 FGGP02679 453 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 KLKB1P03952 638 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 GOT1P17174 413 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 ZXDBP98169 803 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 TFDP2Q14188 446 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 LONRF2Q1L5Z9 754 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 ANKRD20A8PQ5CZ79 823 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 KAZNQ674X7 775 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 RAP1GAP2Q684P5 730 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 RFX8Q6ZV50 586 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 SLC13A5Q86YT5 568 aaPredicted RBP21.39■■□□□ 1.01
CHD3-204ENST00000439235 KIAA1958Q8N8K9 716 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 TTC16Q8NEE8 873 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 SMARCD2Q92925 531 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 RNF157Q96PX1 679 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 MAGEB5Q9BZ81 275 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 CWC15Q9P013 229 aaKnown RBP21.39■■□□□ 1.01
CHD3-204ENST00000439235 STIM2Q9P246 746 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 STOML2Q9UJZ1 356 aa21.39■■□□□ 1.01
CHD3-204ENST00000439235 USP15Q9Y4E8 981 aaPredicted RBP21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms