RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 HLA-DPA1P20036 260 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 GRM5P41594 1212 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 GRSF1Q12849 480 aaKnown RBP eCLIP12.4□□□□□ -0.42
NEK1-201ENST00000439128 NTRK3Q16288 839 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 C1orf146Q5VVC0 180 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 ARMC2Q8NEN0 867 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 DUS2Q9NX74 493 aaKnown RBP12.4□□□□□ -0.42
NEK1-201ENST00000439128 CTNNAL1Q9UBT7 734 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 CNTNAP1P78357 1384 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 F8VZ95 297 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 CLDN5O00501 218 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 CCNT2O60583 730 aaKnown RBP12.4□□□□□ -0.42
NEK1-201ENST00000439128 COILP38432 576 aaPredicted RBP12.4□□□□□ -0.42
NEK1-201ENST00000439128 TMEM119Q4V9L6 283 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 IFNEQ86WN2 208 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 CLYBLQ8N0X4 340 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 ATG4AQ8WYN0 398 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 ERGIC2Q96RQ1 377 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 ZSWIM1Q9BR11 485 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 POLR1EQ9GZS1 481 aaKnown RBP12.4□□□□□ -0.42
NEK1-201ENST00000439128 CCDC90BQ9GZT6 254 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 SYTL2Q9HCH5 934 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 RGS18Q9NS28 235 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 NDE1Q9NXR1 346 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 CHUKO15111 745 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 NUDT14O95848 222 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 TRUB2O95900 331 aaKnown RBP12.4□□□□□ -0.42
NEK1-201ENST00000439128 PLEKP08567 350 aaPredicted RBP12.4□□□□□ -0.42
NEK1-201ENST00000439128 HTRA3P83110 453 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 PGS1Q32NB8 556 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 TMC5Q6UXY8 1006 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 ZNF655Q8N720 491 aaPredicted RBP12.4□□□□□ -0.42
NEK1-201ENST00000439128 SPATA20Q8TB22 786 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 SEZ6LQ9BYH1 1024 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 DNAJC16Q9Y2G8 782 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 CACNB4O00305 520 aaPredicted RBP12.4□□□□□ -0.42
NEK1-201ENST00000439128 PLIN5Q00G26 463 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 TEAD4Q15561 434 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 EARS2Q5JPH6 523 aaKnown RBP12.4□□□□□ -0.42
NEK1-201ENST00000439128 RGS9BPQ6ZS82 235 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 YY1AP1Q9H869 796 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 ZNF556Q9HAH1 456 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 MIEF1Q9NQG6 463 aa12.4□□□□□ -0.42
NEK1-201ENST00000439128 MAP3K10Q02779 954 aa12.4□□□□□ -0.43
NEK1-201ENST00000439128 UGCGQ16739 394 aa12.4□□□□□ -0.43
NEK1-201ENST00000439128 OR9Q1Q8NGQ5 310 aa12.4□□□□□ -0.43
NEK1-201ENST00000439128 ATP13A3Q9H7F0 1226 aa12.4□□□□□ -0.43
NEK1-201ENST00000439128 IL1RL2Q9HB29 575 aa12.4□□□□□ -0.43
NEK1-201ENST00000439128 TBC1D14Q9P2M4 693 aa12.4□□□□□ -0.43
NEK1-201ENST00000439128 GLRBP48167 497 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 PSMD8P48556 350 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 ALDH6A1Q02252 535 aaKnown RBP12.39□□□□□ -0.43
NEK1-201ENST00000439128 MED21Q13503 144 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 PEX6Q13608 980 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 DENND1BQ6P3S1 775 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 FUT10Q6P4F1 479 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 GOLGA2P5Q9HBQ8 144 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 PLK2Q9NYY3 685 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 GRID1Q9ULK0 1009 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 TBC1D4O60343 1298 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 CCDC22O60826 627 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 BTNL9Q6UXG8 535 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 SLC13A5Q86YT5 568 aaPredicted RBP12.39□□□□□ -0.43
NEK1-201ENST00000439128 TPCN2Q8NHX9 752 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 LRRC1Q9BTT6 524 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 ELOVL6Q9H5J4 265 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 ACTR8Q9H981 624 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 GPAMQ9HCL2 828 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 CYP4F12Q9HCS2 524 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 ADAM28Q9UKQ2 775 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 EPHX1P07099 455 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 CD44P16070 742 aaKnown RBP12.39□□□□□ -0.43
NEK1-201ENST00000439128 ARF4P18085 180 aaPredicted RBP12.39□□□□□ -0.43
NEK1-201ENST00000439128 MAPK1P28482 360 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.39□□□□□ -0.43
NEK1-201ENST00000439128 NRBF2Q96F24 287 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 FRMD8Q9BZ67 464 aaPredicted RBP12.39□□□□□ -0.43
NEK1-201ENST00000439128 WWP1Q9H0M0 922 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 UNC93B1Q9H1C4 597 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 ZFP14Q9HCL3 533 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 PTPRJQ12913 1337 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 ARHGEF28Q8N1W1 1705 aaKnown RBP12.39□□□□□ -0.43
NEK1-201ENST00000439128 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.39□□□□□ -0.43
NEK1-201ENST00000439128 PROSCO94903 275 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 CPSF4O95639 269 aaKnown RBP12.39□□□□□ -0.43
NEK1-201ENST00000439128 PPP2R2AP63151 447 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 C1QBPQ07021 282 aaKnown RBP12.39□□□□□ -0.43
NEK1-201ENST00000439128 OR10G6Q8NH81 332 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 SPPL2BQ8TCT7 592 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 WNT8BQ93098 351 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 FANCEQ9HB96 536 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 AHSPQ9NZD4 102 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 OR12D3Q9UGF7 316 aa12.39□□□□□ -0.43
NEK1-201ENST00000439128 GSAPA4D1B5 854 aa12.38□□□□□ -0.43
NEK1-201ENST00000439128 ERI2A8K979 691 aaKnown RBP12.38□□□□□ -0.43
NEK1-201ENST00000439128 RNASEH2AO75792 299 aaKnown RBP12.38□□□□□ -0.43
NEK1-201ENST00000439128 IFNA16P05015 189 aa12.38□□□□□ -0.43
NEK1-201ENST00000439128 ITGB5P18084 799 aa12.38□□□□□ -0.43
NEK1-201ENST00000439128 TYMPP19971 482 aa12.38□□□□□ -0.43
NEK1-201ENST00000439128 IL10P22301 178 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms